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. Author manuscript; available in PMC: 2010 Feb 10.
Published in final edited form as: Alcohol Clin Exp Res. 2009 Jan 21;33(4):712. doi: 10.1111/j.1530-0277.2008.00888.x

Table 1.

Polymorphisms of MPDZ Gene of Alcoholic Subjects and Coriell Controls

Minor allele frequency
Chr. position Gene position dbSNP ID Variation Amino acid change Location Position Coriell n = 64 No AWS n = 60 AWS n = 60
1 13242041 −1727 G > C Upstream-1727 Upstream-1727 0.0000 0.0085 0.0000
2 13241615 −1301 C > G Upstream-1301 Upstream-1301 0.0078 0.0000 0.0000
3 13240778 −464 G > A Upstream-464 Upstream-464 0.0000 0.0085 0.0000
4 13240750 −436 insT Upstream-436 Upstream-436 0.2344 0.2458 0.1967
5 13240302 13 A > G Ile5Val Exon 1 c13 0.0000 0.0085 0.0082
6 13240274 41 C > T Intron 1 IVS1 + 25 0.0078 0.0085 0.0164
7 13237636 2679 C > G Gln61Glu Exon 2 c181 0.0000 0.0085 0.0000
8 13237519 2796 A > G Intron 2 IVS2 + 115 0.0000 0.0085 0.0082
9 13214491 25824 rs17273542 C > T Ser92Leu Exon 3 c275 0.0078 0.0169 0.0000
10 13214441 25874 G > T Gly109Cys Exon 3 c325 0.0000 0.0000 0.0082
11 13214410 25905 G > C Cys119Ser Exon 3 c356 0.0000 0.0000 0.0082
12 13214354 25961 A > C Intron 3 IVS3 + 31 0.0156 0.0000 0.0000
13 13213592 26723 C > G Gln171Glu Exon 4 c511 0.0000 0.0000 0.0082
14 13213515 26800 G > A Intron 4 IVS4 + 55 0.0000 0.0000 0.0082
15 13212200 28115 A > C Intron 5 IVS5 + 32 0.0156 0.0085 0.0082
16 13211401 28914 A > G Lys282Lys Exon 6 c846 0.0078 0.0000 0.0000
17 13209839 30476 C > T Intron 6 IVS6 + 1532 0.0078 0.0000 0.0000
18 13209797 30517–30518 delTA Intron 6 IVS6 + 1573–74 0.0156 0.0000 0.0000
19 13209603 30712 rs34911705 G > C Leu347Phe Exon 7 c1041 0.0078 0.0000 0.0000
20 13209570 30745 rs13297480 A > G Thr358Thr Exon 7 c1074 0.0938 0.2034 0.0902
21 13209459 30856 A > G Intron 7 IVS7 + 99 0.0000 0.0085 0.0000
22 13195789 44526 A > T Intron 10 IVS10 + 126 0.0313 0.0000 0.0164
23 13195264 45051 rs2039333 T > C Intron 10 IVS10 + 651 0.0313 0.0000 0.0164
24 13195020 45295 C > T Intron 11 IVS11 + 15 0.0000 0.0085 0.0000
25 13186032 54283 T > C Intron 12 IVS12 + 88 0.0078 0.0000 0.0082
26 13182360 57955 insA Intron 13 IVS13 + 806 0.0156 0.0169 0.0164
27 13182320 57995 rs1331676 G > C Intron 13 IVS13 + 846 0.0000 0.0000 0.0082
28 13182201 58114 C > T Arg633STOP Exon 14 c1897 0.0000 0.0085 0.0000
29 13182048 58267 rs13291548 A > G Intron 14 IVS14 + 82 0.0391 0.0169 0.0000
30 13182024 58291 rs16930194 C > T Intron 14 IVS14 + 106 0.0234 0.0339 0.0164
31 13180292 60023 G > A Val659Ile Exon 15 c1975 0.0078 0.0085 0.0082
32 13180272 60043 C > T Ile665Ile Exon 15 c1995 0.0078 0.0000 0.0000
33 13180235 60080 A > T Thr678Ser Exon 15 c2032 0.0078 0.0000 0.0082
34 13180163 60152 rs4741289 G > A Glu702Lys Exon 15 c2104 0.0078 0.0000 0.0164
35 13180162 60153 rs4740548 A > T Glu702Val Exon 15 c2105 0.0078 0.0000 0.0164
36 13179093 61222 C > T Intron 15 IVS15 + 1020 0.0000 0.0000 0.0082
37 13179017 61298 rs41265290 A > G Intron 15 IVS15 + 1096 0.0313 0.0000 0.0082
38 13178754 61561 T > G Intron 16 IVS16 + 29 0.0078 0.0000 0.0000
39 13178719 61596 T > C Intron 16 IVS16 + 64 0.0000 0.0085 0.0000
40 13176355 63960 A > G Lys799Glu Exon 17 c2395 0.0078 0.0000 0.0082
41 13173701 66614 A > G Intron 17 IVS17 + 2568 0.0000 0.0085 0.0000
42 13173486 66829 rs34704118 A > G Leu860Leu Exon 18 c2580 0.0156 0.0000 0.0082
43 13166312 74003 rs2274856 G > A Ser918Ser Exon 19 c2754 0.2734 0.3051 0.2049
44 13165987 74328 rs1331674 G > A Intron 19 IVS19 + 148 0.2734 0.2966 0.2131
45 13165908 74407 C > T Intron 19 IVS19 + 227 0.0391 0.0339 0.0164
46 13165719 74594–74596 rs3831219 delCTC Intron 20 IVS20 + 30–32 0.3359 0.3390 0.2541
47 13165639 74676 G > T Intron 20 IVS20 + 112 0.0000 0.0085 0.0000
48 13158588 81727 T > C Intron 20 IVS20 + 7163 0.0000 0.0000 0.0082
49 13158251 82064 insT Intron 21 IVS21 + 114 0.0000 0.0085 0.0000
50 13153010 87305 rs1331672 C > G Intron 21 IVS21 + 5355 0.3359 0.3220 0.2295
51 13148261 92054 delC Intron 22 IVS22 + 4429 0.0156 0.0085 0.0164
52 13148062 92253 rs41265286 G > A Ser1136Asn Exon 23 c3407 0.0078 0.0085 0.0000
53 13140714 99601 G > A Intron 23 IVS23 + 7303 0.0313 0.0000 0.0082
54 13140558 99757 T > G Ser1194Arg Exon 24 c3582 0.0078 0.0085 0.0000
55 13140531 99784 rs10756457 A > G Lys1203Lys Exon 24 c3609 0.3359 0.3475 0.2377
56 13140506 99809 C > T Intron 24 IVS24 + 4 0.0000 0.0000 0.0082
57 13137723 102592 rs7024892 A > G Intron 24 IVS24 + 2787 0.3281 0.3644 0.2377
58 13137602 102713 G > A Arg1229Gln Exon 25 c3686 0.0000 0.0085 0.0000
59 13137569 102746 A > T Gln1240Leu Exon 25 c3719 0.0000 0.0000 0.0082
60 13133591 106724 G > A Intron 25 IVS25 + 3956 0.0000 0.0000 0.0082
61 13133470 106845 G > T Asp1279Tyr Exon 26 c3835 0.0000 0.0085 0.0000
62 13133254 107061 T > C Intron 26 IVS26 + 211 0.0078 0.0000 0.0000
63 13130070 110245 G > A Glu1307Lys Exon 27 c3919 0.0000 0.0085 0.0000
64 13127982 112333 delT Leu1392a Exon 28 c4174 0.0078 0.0000 0.0000
65 13127889 112426 A > G Intron 28 IVS28 + 67 0.0000 0.0085 0.0082
66 13126160 114155 G > C Gln1438His Exon 30 c4314 0.0000 0.0000 0.0082
67 13123801 116514 A > G Intron 31 IVS31 + 22 0.0000 0.0000 0.0082
68 13116836 123479 G > T Intron 31 IVS31 + 6987 0.0078 0.0085 0.0000
69 13115415 124900 T > C Intron 33 IVS33 + 1100 0.0078 0.0000 0.0000
70 13115201 125114 rs2297003 A > G Intron 34 IVS34 + 14 0.3359 0.3390 0.2459
71 13113330 126985 T > C Intron 34 IVS34 + 1885 0.0000 0.0000 0.0082
72 13109766 130549 A > G Intron 37 IVS37 + 1972 0.0000 0.0085 0.0082
73 13105422 134893 rs2274647 A > C Intron 38 IVS38 + 4079 0.3125 0.3644 0.2705
74 13105350 134965 insC Intron 38 IVS38 + 4151 0.0078 0.0085 0.0082
75 13105349 134966 rs41265282 C > G Intron 38 IVS38 + 4152 0.0313 0.0000 0.0082
76 13103159 137156 delA Intron 40 IVS40 + 771 0.0313 0.0000 0.0082
77 13103006 137309 A > G Intron 41 IVS41 + 4 0.0000 0.0085 0.0000
78 13102228 138087 C > G Intron 41 IVS41 + 782 0.0078 0.0000 0.0000
79 13102024 138291 rs34605667 G > A Arg1880Lys Exon 42 c5639 0.0547 0.0339 0.0492
80 13102015 138300 G > A Intron 42 IVS42 + 8 0.0000 0.0000 0.0082
81 13100138 140177 T > A Intron 43 IVS43 + 497 0.0078 0.0000 0.0000
82 13100068 140247 C > T Intron 43 IVS43 + 567 0.0078 0.0000 0.0000
83 13099969 140346 T > C Ile1947Thr Exon 44 c5840 0.0000 0.0085 0.0000
84 13099015 141300 G > T Gly1968Cys Exon 45 c5902 0.0000 0.0000 0.0082
85 13098915 141400 C > A Intron 45 IVS45 + 20 0.0000 0.0000 0.0082
86 13098824 141491 G > A Intron 45 IVS45 + 111 0.0078 0.0000 0.0000
87 13098794 141521 rs3765550 A > G Intron 45 IVS45 + 141 0.4063 0.3729 0.4426
88 13097222 143093 C > T Intron 45 IVS45 + 1713 0.0000 0.0000 0.0082
89 13097121 143194 A > G Intron 45 IVS45 + 1814 0.0078 0.0085 0.0000
90 13096598 143717 rs3264 A > G Exon 46 3′-UTR + 366 0.3359 0.4237 0.3689
91 13096469 143846 A > G Intron 46 Intergenic + 109 0.0000 0.0000 0.0082
92 13096335 143980 rs722651 C > T Intron 46 Intergenic + 243 0.3828 0.2627 0.3607

AWS, alcohol withdrawal seizure.

Variations included in the haplotype analysis are highlighted. AWS group included alcohol-dependent subjects with a history of withdrawal seizures. No AWS group included alcohol-dependent subjects without history of withdrawal seizures.

a

A frameshift.