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. Author manuscript; available in PMC: 2011 Feb 1.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2010 Feb;19(2):537. doi: 10.1158/1055-9965.EPI-09-0898

Table 1.

Primer and/or probe sequences for genotyping

Polymorphism Sequence

UGT1A1
PCR primers
 FP 6FAM – GTC ACG TGA CAC AGT CAA AC 3′
 RP 5′ GTT TCT TTT TGC TCC TGC CAG AGG TT 3′

UGT1A3
PCR primers
 FP 5′ AGT GAG CAC AGG GTC AGA CGT 3′
 RP 5′ TCC AGG ATG GAT CAG TTC CA 3′

Sequencing primers
 FP1 5′ GCT CAG TGA CAA GGT AAT TA 3′
 RP1 5′ GAA GGC TAT TAT GAC AAG GA 3′
 FP2 5′ CAC ACT CAA CTG TAC TTT GAA 3′
 RP2 5′ CTT TGC ATG AAT GTC ATG T 3′

UGT2B4
PCR primers
 FP 5′ TTC ATC ATG ATC AAC CAG TGA 3′
 RP 5′ CTT CCA GCC TCA GAC GTA AT 3′

UGT2B7
PCR primers
 FP 5′ GGC TTA TTC GAA ACT CCT GGA A 3′
 RP 5′ TGG AGT CCT CCA ACA AAA TCA A 3′

Probes
 C 6FAM – AGT TTC CAc ATC CAC- MGBNFQ
 T VIC – TTT CCA tAT CCA CTC TT- MGBNFQ

UGT2B15
PCR primers
 FP 5′ GCC AGT AAA TCA TCT GCT ATT AAA TTA GAA 3′
 RP 5′ GCA TCT TTA CAG AGC TTG TTA CTG TAG TCA TA 3′

Probes
 T 6FAM – TCA GAA GAG AAT CTT CCA AAT AAT TT- MGBNFQ
 G VIC TCA GAA GAG AAT CTT CCA AAT CAT TT- MGBNFQ

UGT2B17
PCR primers
 Exon1 FP 5′ TGA AAA TGT TCG ATA GAT GGA CAT ATA GTA 3′
 Exon1 RP 5′ GAC ATC AAA TTT TGA CTC TTG TAG TTT TC 3′
 Deletion FP 5′ TTT AAT GTT TTC TGC CTT ATG CCA C 3′
 Deletion RP 5′ AGC CTA TGC AAT TTT CAT TCA ACA TAG 3′

Probes
 Exon1 6FAM – TAC ATT TTG GTC ATA TTT TTC ACA ACT ACA AGA ATT GT- MGBNFQ
 Deletion JOE – ACT ACA CTG AGA TTT ACA AAA GAA TTC TGT CAG GAT ATA G- MGBNFQ

SULT1A1
PCR primers
 FP 5′ AGT TGG CTC TGC AGG GTT TCT 3′
 RP 5′ ACC ACG AAG TCC ACG GTC TC 3′

Probes
 R VIC – TGG CAG GGA GCG C- MGBNFQ
 H 6FAM – CTG GCA GGG AGT GC- MGBNFQ