Table 1. Top 4 SNPs associated with diabetic nephropathy in a genome-wide screening.
Nephropathy(a) | p for HWE(b) | Control(a) | p for HWE(b) | Smallest p (model) | |
rs2268388 (C > T) | 0.25 (413/276/48) | 0.83 | 0.17 (379/155/18) | 0.66 | 1.4×10−6 (allelic) |
Ch 12, ACACB | |||||
rs2250736 (C > T) | 0.278 (394/288/63) | 0.32 | 0.338 (233/262/55) | 0.13 | 0.0002 (dominant) |
Ch 3, CACNA1D | |||||
rs3777587 (G > A) | 0.523 (156/399/191) | 0.05 | 0.459 (166/269/120) | 0.57 | 0.0002 (dominant) |
Ch 6, CLIC5 | |||||
rs7148607 (T > C) | 0.34 (318/353/76) | 0.06 | 0.39 (219/243/94) | 0.13 | 0.0003 (recessive) |
Ch 14 |
(a)minor allele frequencies are shown, and genotype counts are in parenthesis.
(b)p values for Hardy Weinberg equilibrium test.