Table 1.
Average S2 from NMR spectroscopy and MD
Technique |
NMR |
MD |
||||
---|---|---|---|---|---|---|
Analysis method |
MF∗ |
relax |
M1† |
M2‡ |
||
Simulation | 1 | 2 | 3 | |||
All residues§ | 0.901 | 0.886 | 0.854 | 0.853 | 0.866 | 0.853 |
α-helices¶ | 0.921 | 0.904 | 0.894 | 0.899 | 0.902 | 0.896 |
β-strands‖ | 0.893 | 0.877 | 0.875 | 0.876 | 0.890 | 0.876 |
Loops∗∗ | 0.883 | 0.869 | 0.803 | 0.796 | 0.819 | 0.797 |
Ω loop†† | 0.898 | 0.901 | 0.705 | 0.755 | 0.746 | 0.748 |
Converged residues | 0.868 | 0.876 | 0.874 | |||
Unconverged residues‡‡ | 0.833 | 0.820 | 0.844 |
Original ModelFree analysis (2).
Internal autocorrelation, individual simulations.
Internal autocorrelation by randomization of all simulations.
Except N-terminus (H26) and 12 prolines for MD: 27, 62, 67, 107, 145, 167, 174, 183, 219, 226, 252, and 257. For NMR spectroscopy, this also excludes residues that could not be analyzed and residues whose model-free model does not involve an S2.
There are 12 α-helices in the structure: H1, 26–40; H2A, 69–71; H2B, 72–85; H3, 109–111; H4, 119–128; H5,132–142; H6, 145–154; H7, 168–170; H8, 183–195; H9, 201–212; H10, 221–224; and H11, 272–288.
There are five β-strands (in one sheet) in the structure: S1, 56–60; S2, 43–50; S3, 259–266; S4, 244–251; and S5, 230–237.
Including the Ω loop.
The Ω loop spans residues 161–179.
Fourteen residues are unconverged in all three simulations: E64, S70, V159, T160, L169, N170, N175, D176, E177, R191, L193, L194, L198, and A202.