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. Author manuscript; available in PMC: 2011 Jan 6.
Published in final edited form as: Mol Cancer Ther. 2010 Jan 6;9(1):1. doi: 10.1158/1535-7163.MCT-09-0321

Table 2.

Correlations between E-cad expression and melhylation parameters, and transcript factor expression levels from HG-U133 DNA microarray analyses.a

SNAI1

NCI-60 BR CNS CO LC LE ME OV RE
methylation 0.07 0.62 −0.49 0.50 0.51 −0.27 0.12 −0.05 0.62
Hu6800 −0.12 0.21 −0.81 −0.13 −0.43 0.69 −0.25 0.85 −0.40
9706 −0.13 0.15 0.96 −0.68 −0.45 0.14 −0.15 0.63 0.17
U95 −0.13 0.07 0.59 −0.69 −0.40 na b −0.13 0.76 −0.54
U133 −0.17 0.09 0.47 −0.48 −0.43 0.62 0.05 0.73 −0.41
Protein −0.11 0.27 0.02 −0.64 −0.21 −0.58 −0.34 0.42 −0.18
SNAI2

NCI-60 BR CNS CO LC LE ME OV RE
methylation 0.17 0.59 −0.26 0.76 −0.23 −0.90 0.31 0.37 0.11
Hu6800 −0.39 −0.91 −0.77 −0.39 −0.28 0.26 0.07 −0.39 −0.63
9706 −0.32 −0.90 0.84 −0.71 −0.35 0.93 0.06 −0.63 −0.60
U95 −0.34 −0.90 0.68 −0.58 −0.42 na b −0.06 −0.69 −0.43
U133 −0.32 −0.90 0.01 −0.60 −0.37 −0.08 −0.28 −0.38 −0.37
Protein −0.35 −0.76 −0.33 −0.63 −0.44 0.75 0.05 −0.39 0.34
TCF3

NCI-60 BR CNS CO LC LE ME OV RE
methylation −0.17 0.00 −0.30 −0.29 0.21 −0.40 −0.26 −0.66 0.69
Hu6800 0.19 0.72 0.03 −0.29 0.04 −0.28 0.24 −0.18 −0.07
9706 0.10 0.69 0.12 −0.37 −0.02 0.30 0.27 0.43 −0.14
U95 0.15 0.64 −0.16 −0.30 0.08 na b 0.21 0.09 −0.24
U133 0.12 0.65 0.22 −0.42 −0.09 0.84 0.41 0.24 0.39
Protein 0.14 0.67 0.08 0.05 0.14 0.03 −0.05 0.36 −0.05
TCF8

NCI-60 BR CNS CO LC LE ME OV RE
methylation 0.36 0.69 −0.64 0.70 −0.04 0.32 0.77 0.44 −0.35
Hu6800 −0.66 −0.98 −0.94 −0.37 −0.67 −0.70 −0.55 −0.90 0.11
9706 −0.62 −0.98 0.74 −0.77 −0.94 −0.27 −0.48 −0.88 −0.19
U95 −0.70 −0.99 0.94 −0.77 −0.84 na b −0.46 −0.91 −0.13
U133 −0.62 −0.99 −0.11 −0.65 −0.91 −0.07 −0.52 −0.92 −0.19
Protein −0.53 −0.87 −0.24 −0.85 −0.92 0.13 −0.15 −0.62 0.71
TWIST1

NCI-60 BR CNS CO LC LE ME OV RE
methylation 0.20 0.97 −0.12 −0.26 −0.14 0.38 0.29 0.06 −0.10
Hu6800 −0.35 −0.52 −0.17 −0.10 −0.37 −0.61 −0.72 0.61 0.68
9706 −0.32 −0.52 0.02 −0.41 −0.38 −0.47 −0.78 0.34 0.10
U95 −0.40 −0.59 0.17 −0.48 −0.43 na b −0.84 0.37 −0.19
U133 −0.32 −0.59 0.12 −0.33 −0.33 −0.46 −0.70 0.60 0.35
Protein −0.30 −0.30 0.51 −0.20 −0.52 0.41 −0.69 0.33 0.26
ZFHX1B

NCI-60 BR CNS CO LC LE ME OV RE
methylation 0.28 0.77 −0.57 −0.02 0.33 0.45 −0.26 0.87 −0.44
Hu6800 −0.35 −0.71 −0.25 −0.42 −0.43 0.32 0.13 −0.23 −0.33
9706 −0.34 −0.68 −0.15 0.07 −0.51 −0.58 0.01 −0.69 −0.18
U95 −0.31 −0.72 0.49 −0.08 −0.62 na b 0.09 −0.41 0.04
U133 −0.30 −0.71 −0.86 −0.14 −0.53 −0.10 −0.09 −0.60 −0.28
Protein −0.42 −0.44 −0.90 −0.13 −0.57 −0.53 0.14 −0.23 0.25
a

Significance of correlations at p<0.05, without comparisons correction, for blocks with bold type. All data profiles are from Table 1.

b

Correlation not available due to an absence of pattern for E-cad expression in HG-U95 LE’s