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. 2010 Feb 15;5(2):e9222. doi: 10.1371/journal.pone.0009222

Table 1. A comparative analysis of Mtb-BirA and other known bacterial BirA structures.

Organism (Function) PDB Identity (%) Naligned RMSD (Å) Space group VM Solvent Content (%) Mol per a.u. Oligomeric state in solution Ligand Reference
M. tuberculosis (M) 3l2z 100 238 0.00 P212121 2.2 44 2 monomer - This study
M. tuberculosis 3l1a 100 238 0.82 P212121 1.7 28 2 monomer - This study
M. tuberculosis 2cgh 100 238 0.46 P212121 2.3 45.4 2 monomer - Unpublished
E. coli (B) 1bia 30.2 215 1.80 P43212 2.8 55.6 1 monomer - [10]
E. coli 1bib 30.4 217 1.76 P43212 2.8 55.5 1 dimer Biotin [10]
E. coli 1hxd 30.1 219 1.71 C2221 2.9 57.5 2 dimer Biotin [10]
E. coli 2ewn 29.5 220 1.72 P43212 3.8 67.8 2 dimer Biotinol-5′-AMP [12]
P. horikoshii (M) 1wq7 27.2 206 1.55 P21 2.1 38.1 2 dimer - [11]
P. horikoshii 1wpy 26.7 209 1.50 P21 2.1 42.5 2 dimer Biotin [11]
P. horikoshii 2fyk 26.7 209 1.49 P21 2.1 42.5 2 dimer Biotin & ADP Unpublished
P. horikoshii 2dto 26.7 209 1.52 P21 2.1 42.5 2 dimer Biotin & ATP Unpublished
P. horikoshii 1wqw 26.7 209 1.53 P21 2.1 42.5 2 dimer Biotinyl- 5′-AMP [11]
P. horikoshii 2 ejg 28.3 198 1.54 P21 2.4 49.2 2 dimer BCCP [13]
A. aeolicus (M) 3fjp 21.4 196 1.52 P21 2.4 48.2 2 monomer - [14]
A. aeolicus 3efs 21.4 196 1.52 P212121 2.3 45.5 2 monomer Biotin & ATP [14]
M. jannaschii (M) 2ej9 23.8 238 1.70 C2 2.8 56.1 1 monomer Biotin Unpublished

M: Monofunctional biotinylation activity; B: Bifunctional biotinylation and repressor activity; The Cα superposition was performed between chain A of hMtb-BirA (3l2z) and chain A of other PDBs; VM: Mathews Coefficient; Weak dimer.