Table 1. A comparative analysis of Mtb-BirA and other known bacterial BirA structures.
Organism (Function) | PDB | Identity (%) | Naligned | RMSD (Å)‡ | Space group | VM | Solvent Content (%) | Mol per a.u. | Oligomeric state in solution | Ligand | Reference |
M. tuberculosis (M) | 3l2z | 100 | 238 | 0.00 | P212121 | 2.2 | 44 | 2 | monomer | - | This study |
M. tuberculosis | 3l1a | 100 | 238 | 0.82 | P212121 | 1.7 | 28 | 2 | monomer | - | This study |
M. tuberculosis | 2cgh | 100 | 238 | 0.46 | P212121 | 2.3 | 45.4 | 2 | monomer | - | Unpublished |
E. coli (B) | 1bia | 30.2 | 215 | 1.80 | P43212 | 2.8 | 55.6 | 1 | monomer | - | [10] |
E. coli | 1bib | 30.4 | 217 | 1.76 | P43212 | 2.8 | 55.5 | 1 | dimer† | Biotin | [10] |
E. coli | 1hxd | 30.1 | 219 | 1.71 | C2221 | 2.9 | 57.5 | 2 | dimer† | Biotin | [10] |
E. coli | 2ewn | 29.5 | 220 | 1.72 | P43212 | 3.8 | 67.8 | 2 | dimer | Biotinol-5′-AMP | [12] |
P. horikoshii (M) | 1wq7 | 27.2 | 206 | 1.55 | P21 | 2.1 | 38.1 | 2 | dimer | - | [11] |
P. horikoshii | 1wpy | 26.7 | 209 | 1.50 | P21 | 2.1 | 42.5 | 2 | dimer | Biotin | [11] |
P. horikoshii | 2fyk | 26.7 | 209 | 1.49 | P21 | 2.1 | 42.5 | 2 | dimer | Biotin & ADP | Unpublished |
P. horikoshii | 2dto | 26.7 | 209 | 1.52 | P21 | 2.1 | 42.5 | 2 | dimer | Biotin & ATP | Unpublished |
P. horikoshii | 1wqw | 26.7 | 209 | 1.53 | P21 | 2.1 | 42.5 | 2 | dimer | Biotinyl- 5′-AMP | [11] |
P. horikoshii | 2 ejg | 28.3 | 198 | 1.54 | P21 | 2.4 | 49.2 | 2 | dimer | BCCP | [13] |
A. aeolicus (M) | 3fjp | 21.4 | 196 | 1.52 | P21 | 2.4 | 48.2 | 2 | monomer | - | [14] |
A. aeolicus | 3efs | 21.4 | 196 | 1.52 | P212121 | 2.3 | 45.5 | 2 | monomer | Biotin & ATP | [14] |
M. jannaschii (M) | 2ej9 | 23.8 | 238 | 1.70 | C2 | 2.8 | 56.1 | 1 | monomer | Biotin | Unpublished |
M: Monofunctional biotinylation activity; B: Bifunctional biotinylation and repressor activity; ‡The Cα superposition was performed between chain A of hMtb-BirA (3l2z) and chain A of other PDBs; VM: Mathews Coefficient; †Weak dimer.