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. Author manuscript; available in PMC: 2011 Mar 15.
Published in final edited form as: Vet Immunol Immunopathol. 2009 Oct 14;134(1-2):68. doi: 10.1016/j.vetimm.2009.10.011

Figure 2.

Figure 2

Complex intergenic recombination patterns between fragments of the env, gag and pol genes (modified from Hayward and Rodrigo, 2008). Lines link sequences isolated from the same host, to highlight incongruities in subtype assignment between the different gene regions. The three thickened lines show the significant intergenic recombinant sequences, as determined by the SH test (Shimodaira and Hasegawa, 1999) (see Hayward and Rodrigo, 2008). Reference sequences are FIV-C36 (subtype C; AY600517), Petaluma (subtype A; M25381), TM2 (subtype B; M59418).