Table 4.
Correlations between Amino acid Composition of Disordered Proteins and Different Classes of Secondary Structure in Ordered Proteins.
Exposed Residues |
Buried Residues |
||||||||
Helix | Sheet | Turn | Coil | Helix | Sheet | Turn | Coil | D85 | |
Exposed | |||||||||
Helix | 1 | 0.53 | 0.44 | 0.61 | 0.12 | −0.23 | −0.04 | −0.18 | 0.64 |
Sheet | 2.6 | 1 | 0.38 | 0.71 | −0.04 | −0.08 | 0.01 | 0.10 | 0.49 |
Turn | 2.1 | 1.8 | 1 | 0.81 | −0.10 | −0.28 | 0.67 | 0.35 | 0.74 |
Coil | 3.3 | 4.3* | 5.7* | 1 | −0.11 | −0.33 | 0.30 | 0.22 | 0.85 |
Buried | |||||||||
Helix | 0.5 | −0.2 | −0.4 | −0.5 | 1 | 0.80 | 0.33 | 0.62 | 0.08 |
Sheet | −1.0 | −0.4 | −1.2 | −1.5 | 5.7* | 1 | 0.28 | 0.70 | −0.20 |
Turn | −0.2 | 0.0 | 3.8 | 1.3 | 1.5 | 1.2 | 1 | 0.76 | 0.32 |
Coil | −0.8 | 0.4 | 1.6 | 1.0 | 3.4 | 4.1* | 4.9* | 1 | 0.22 |
D85 | 3.5 | 2.4 | 4.6* | 6.9* | 0.3 | −0.9 | 1.4 | 0.9 | 1 |
NOTE.—The t scores for each correlation are shown, and asterisks indicate significance at P <0.05 using the Holm–Bonferroni correction. D, disorder. Information for disordered proteins is based upon the >85% similarity matrix and for ordered proteins is from Goldman, et al. 1998.