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. 2010 Feb 10;11(Suppl 1):S6. doi: 10.1186/1471-2164-11-S1-S6

Figure 7.

Figure 7

32 transcripts is an optimum threshold for achieving similar cumulative frequency distribution amongst replicates. KS statistics was applied iteratively to our biological replicates (red and black lines), each graph depicts a gradual change in the threshold value. The KS test statistics can be thought of as a cost function that we seek to minimize to ensure that the distributions between the two replicates are similar. Applying such a strategy iteratively as we change the threshold value gradually, we arrive at a point where both line converge together indicating similar distributions. The point where this first occurs is designated as the minimum threshold count value of biological significance.