Table 1. Genes used for validation of ChIP-on-chip predictions.
| Number | Gene name | Chromosome | Pol-II peak signal ratio (P25/P2) |
|---|---|---|---|
| 1 |
Slc24a1 |
9 |
14 |
| 2 |
Ablim1 |
19 |
11.1 |
| 3 |
Rcvrn |
11 |
10.9 |
| 4 |
Rho |
6 |
10 |
| 5 |
A930008G19Rik (Fam53b) |
7 |
8.5 |
| 6 |
Rs1h |
X |
8 |
| 7 |
Mef2c |
13 |
6.7 |
| 8 |
Grk1 |
8 |
6.5 |
| 9 |
Dpf3 |
12 |
6.5 |
| 10 |
Rdh12 |
12 |
5.7 |
| 11 |
Mllt6 |
11 |
5.6 |
| 12 |
Jmjd2c |
4 |
5.6 |
| 13 |
Sag |
1 |
5.2 |
| 14 |
Pde6b |
5 |
5 |
| 15 |
Syne1 |
10 |
4.9 |
| 16 |
Cdk5r2 |
1 |
4.9 |
| 17 |
Vtn |
11 |
4.4 |
| 18 |
Cckbr |
7 |
4.3 |
| 19 |
Rds |
17 |
4.1 |
| 20 |
Uckl1 |
2 |
3.9 |
| 21 |
E130103I17Rik (Bbs9) |
9 |
3.8 |
| 22 |
Slc38a3 |
9 |
3.5 |
| 23 |
Gnat1 |
9 |
3.5 |
| 24 |
6330407D12Rik (Ccdc126) |
6 |
3.2 |
| 25 |
Ttc8 |
12 |
3 |
| 26 |
Rp1h |
1 |
2.9 |
| 27 |
Rbp3 |
14 |
2.9 |
| 28 |
Coro2b |
9 |
2.9 |
| 29 |
Nr1d1 |
11 |
2.8 |
| 30 |
G430022H21Rik |
3 |
2.2 |
| 31 |
Rab14 |
2 |
2.1 |
| 32 |
Elovl4 |
9 |
1.8 |
| 33 |
Rheb |
5 |
1.8 |
| 34 |
Hdac10 |
15 |
1.7 |
| 35 |
Hdac9 |
12 |
1.6 |
| 36 |
Rnf11 |
4 |
1.3 |
| 37 |
Grik2 |
10 |
0.9 |
| 38 | Casc5 | 2 | 0.5 |
Genes represent a full range of Pol-II peak signal ratios (P25 / P2). Genes with ratios >1 potentially have increased amounts of Pol-II binding in mature (P25) versus immature (P2) neural retina.