Table 1.
Estimates of nucleotide and haplotype diversity for the candidate genes BLZ1, BLZ2, BPBF and HvGAMYB
| Accession (sub)set1 | No. of polymorphism | Nucleotide diversity (π × 10-3) |
No. of haplotypes | Haplotype diversity (Hd) |
|---|---|---|---|---|
| BLZ1 | ||||
| Total | 20 | 5.6 | 8 | 0.65 |
| AM | 20 | 5.8 | 6 | 0.68 |
| EA | 19 | 6.0 | 7 | 0.77 |
| EU | 20 | 5.2 | 8 | 0.66 |
| WANA | 20 | 5.2 | 8 | 0.73 |
| 2-rowed | 19 | 5.4 | 7 | 0.63 |
| 6-rowed | 20 | 5.8 | 8 | 0.70 |
| BLZ2 | ||||
| Total | 72 | 6.5 | 18 | 0.68 |
| AM | 27 | 6.0 | 4 | 0.65 |
| EA | 64 | 8.0 | 9 | 0.87 |
| EU | 67 | 4.0 | 9 | 0.38 |
| WANA | 56 | 6.3 | 9 | 0.80 |
| 2-rowed | 58 | 1.8 | 9 | 0.23 |
| 6-rowed | 68 | 5.9 | 16 | 0.86 |
| BPBF | ||||
| Total | 26 | 8.1 | 21 | 0.68 |
| AM | 22 | 9.1 | 4 | 0.60 |
| EA | 25 | 7.6 | 11 | 0.73 |
| EU | 23 | 7.7 | 14 | 0.62 |
| WANA | 21 | 8.9 | 8 | 0.77 |
| 2-rowed | 23 | 7.4 | 14 | 0.56 |
| 6-rowed | 25 | 8.7 | 14 | 0.77 |
| HvGAMYB | ||||
| Total | 45 | 2.4 | 18 | 0.74 |
| AM | 34 | 2.8 | 8 | 0.80 |
| EA | 30 | 1.8 | 8 | 0.64 |
| EU | 31 | 2.1 | 9 | 0.68 |
| WANA | 37 | 2.7 | 11 | 0.84 |
| 2-rowed | 29 | 1.9 | 10 | 0.61 |
| 6-rowed | 43 | 2.7 | 15 | 0.84 |
1: Diversity estimates for different geographic regions (AM: America, EA: East Asia, EU: Europe, WANA: West Asia and North Africa) and in two-rowed and six-rowed barleys are given