Figure 3. Phylogenetic analysis on pyrosequencing reads with SDRMs detected in bulk, Sanger sequencing.

All positive pyrosequencing reads containing M46L (a) and I84V (b) were analyzed with Sanger sequences from the 96 specimens using Neighbour-Joining (K-2-P) with 100 bootstraps. The pyrosequencing reads with corresponding SDRM are shown in blue with the 96 Sanger sequences shown in red.