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. 2010 Feb 18;5(2):e9180. doi: 10.1371/journal.pone.0009180

Figure 7. Histograms of number of samples as a function of atom-pair distances in the two minima of PMF.

Figure 7

The distance between W47/W58 of PDC109/a and the N atom of PhC in the first (2.5 ÅInline graphic3.5 Å) (A) and second (5.2 ÅInline graphic6.0 Å) (B) minima were calculated from the trajectory saved from the PMF calculation in the window 2.0 ÅInline graphic6.0 Å. The corresponding results for the separation between Y60 of PDC109/a and PhC phosphate group are shown in (C) and (D).