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. 2010 Jan 11;107(4):1321–1326. doi: 10.1073/pnas.0907304107

Table 1.

The binding free energies and the energy components calculated by MM/GBSA (kcal/mol)

No. ΔEvdw ΔEele ΔGGB ΔGSA ΔEele + ΔGGB ΔEvdw + ΔGSA ΔGcal ΔΔGcal*
WT −80.00 ± 0.16 −25.59 ± 0.35 33.97 ± 0.35 −9.87 ± 0.06 8.37 ± 0.00 −89.87 ± 0.22 −81.50 ± 0.46 0.00
Group 1
 M46I −77.43 ± 1.85 −24.01 ± 0.39 34.46 ± 0.37 −10.32 ± 0.64 10.44 ± 0.76 −87.74 ± 1.21 −77.30 ± 0.45 4.20
 I54V −82.99 ± 0.26 −25.38 ± 0.21 36.13 ± 0.16 −9.25 ± 0.57 10.74 ± 0.37 −92.24 ± 0.83 −81.50 ± 0.46 0.00
 V82A −75.98 ± 1.27 −24.67 ± 0.10 34.54 ± 0.13 −9.56 ± 0.00 9.87 ± 0.23 −85.54 ± 1.27 −75.67 ± 1.50 5.83
 M46I/I54V −83.26 ± 1.05 −22.01 ± 1.23 34.19 ± 1.44 −9.98 ± 0.06 12.18 ± 0.21 −93.24 ± 1.11 −81.06 ± 0.90 0.44
 M46I/V82A −70.84 ± 2.86 −24.92 ± 1.87 33.96 ± 1.40 −9.67 ± 1.43 9.04 ± 0.47 −80.52 ± 4.29 −71.48 ± 4.76 10.02
 I54V/82A −71.84 ± 0.64 −19.62 ± 0.92 31.08 ± 1.06 −9.82 ± 0.01 11.46 ± 0.13 −81.66 ± 0.63 −70.20 ± 0.77 11.30
 M46I/I54V/V82A −79.58 ± 0.91 −19.09 ± 0.17 29.89 ± 0.41 −8.92 ± 0.59 10.79 ± 0.24 −88.50 ± 0.33 −77.71 ± 0.08 3.79
Group 2
 G73S −78.79 ± 0.50 −24.76 ± 0.51 33.26 ± 0.14 −10.36 ± 0.67 8.50 ± 0.37 −89.15 ± 0.17 −80.65 ± 0.54 0.85
 L90M −80.56 ± 0.32 −27.13 ± 0.33 35.59 ± 0.06 −9.78 ± 0.06 8.46 ± 0.39 −90.33 ± 0.38 −81.87 ± 0.00 −0.37
 G73S/L90M −81.31 ± 0.37 −22.89 ± 0.19 33.01 ± 0.05 −9.80 ± 0.00 10.12 ± 0.24 −91.11 ± 0.38 −80.99 ± 0.14 0.51

*ΔΔG cal is the difference between the binding free energy of the mutated complex and that of the wild-type.

Standard deviations were estimated from two block average values.