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. 2010 Jan 11;107(4):1321–1326. doi: 10.1073/pnas.0907304107

Table 2.

The binding free energies and the energy components calculated by MM/GBSA (kcal/mol)


ΔEvdw
ΔEele
ΔGGB
ΔGSA
ΔEele + ΔGGB
ΔEvdw + ΔGSA
ΔGcal
ΔΔGcal*
Wild −41.90 ± 0.04 −3.75 ± 0.50 17.62 ± 0.23 −4.92 ± 0.03 13.88 ± 0.27 −46.81 ± 0.01 −32.94 ± 0.26 0.00
G190A −39.67 ± 0.27 −1.82 ± 0.48 16.47 ± 0.42 −4.90 ± 0.02 14.64 ± 0.06 −44.57 ± 0.25 −29.92 ± 0.18 3.02
K103N −42.57 ± 0.13 −3.59 ± 0.13 18.83 ± 0.02 −4.87 ± 0.01 15.24 ± 0.15 −47.46 ± 0.14 −32.22 ± 0.29 0.72
V106A −41.31 ± 0.27 −5.31 ± 0.95 18.25 ± 0.49 −4.87 ± 0.02 12.94 ± 0.46 −46.18 ± 0.26 −33.24 ± 0.72 −0.30
Y181C −41.53 ± 0.56 −6.47 ± 0.46 19.73 ± 0.22 −4.92 ± 0.02 13.62 ± 0.24 −46.45 ± 0.58 −33.19 ± 0.34 −0.25
Y188C −39.42 ± 0.27 −4.28 ± 0.92 19.21 ± 0.73 −5.11 ± 0.00 14.92 ± 0.18 −44.53 ± 0.27 −29.61 ± 0.09 3.33

*ΔΔG cal is the difference between the binding free energy of the mutated complex and that of the wild-type.

Standard deviations were estimated from two block average values.