Table 1.
Summary of platforms
| Authors | Strains/Culture | Platform | Detection strategy | Number/Resolution |
|---|---|---|---|---|
| Lee et al. | BY4741/in YPD | Affymetrix | HMM | 70,871/4 bp |
| Albert et al. | BY4741/in rich media | Pyrosequencing | Chip-Seq Length:~25 bp | ~10,000/~4 bp |
| Whitehouse et al. | S288C/in C media | Affymetrix | Iteratively fitting | WT:58,275/~5 bp |
| M:62,594/~5 bp | ||||
| Shivaswamy et al. | S288C/in rich media | Solexa Ultra-high-throughput sequencing | Chip-Seq | N:49,043/~1 bp |
| Length:~25 bp | H:52,817/~1 bp | |||
| Mavrich et al. | BY4741/YPD | The Roche GS20 | Chip-Seq | 54,753/~1 bp |
| 454 Life Sciences | Length > 100 bp | |||
| Field et al. | BY4741/in YPD | 454 pyrosequencing | Chip-Seq | 43,720~44,134/~1 bp |
| parallel sequencing | Length:~200 bp |
The normal condition is denoted by N, and the heat shock condition is denoted by H. The isw2 mutation strains and wild-type strains are separately represented by M and WT. Numbers in the fifth column represent the total nucleosome counts detected in each experiment and data resolution, respectively.