Table 1.
Transcription factors
| Accession No. | Gene | Name | Sample |
|---|---|---|---|
| CREB transcription factors | |||
| NP_001002809 | Atf6b (Crebl1) | cAMP responsive element binding protein-like 1 | NP |
| NP_604392 | Creb1 | cAMP responsive element binding protein 1 isoform A | NE |
| NP_001099749 | RGD1565584 | similar to tyrosine kinase-associated leucine zipper protein LAZipII | Cyto |
| Basic helix-loop-helix transcription factors | |||
| NP_036913 | Arnt2 | aryl hydrocarbon receptor nuclear translocator 2 | Cyto |
| XP_001072661 | LOC684826 | similar to Basic helix-loop-helix transcription factor scleraxis | NP |
| NP_001020878 | Tfeb | transcription factor EB | NP |
| NP_113965 | Usf1 | upstream stimulatory factor 1 | NE |
| NP_112401 | Usf2 | upstream transcription factor 2 | NE |
| Homeobox transcription factors | |||
| NP_476450 | Barhl1 | BarH-like homeobox 1 | NP |
| XP_001058888 | Chx10 | similar to Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog) isoform 2 | NE |
| XP_347164 | Cutl1 | similar to Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux) | NE |
| NP_036713 | Hoxa2 | homeo box A2 | NE |
| NP_001017480 | Hoxb7 | homeo box B7 | NE |
| XP_001069122 | LOC688999 | similar to Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4) | NE |
| NP_113925 | Nkx6-1 | NK6 homeobox 1 | Cyto |
| NP_001099831 | Pax2 | paired box 2 | NE |
| NP_037133 | Pax6 | paired box 6 | NE |
| NP_112403 | Pax8 | paired box 8 | NE |
| NP_001094151 | Pbx1 | preB-cell leukemia homeobox 1 isoform b | NE |
| XP_001081290 | RGD1562142 | similar to Homeobox protein Hox-B6 (Hox-2.2) (MH-22A) | NE |
| XP_001081293 | RGD1562292 | similar to Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1) | Cyto |
| XP_226533 | RGD1562686 | similar to genetic suppressor element 1 | NE |
| XP_001073119 | RGD1563929 | similar to OG2 homeobox | Cyto |
| XP_234082 | RGD1564874 | similar to NK1 transcription factor related 2-like,b | Cyto |
| XP_001058915 | Zfhx4 | similar to zinc finger homeodomain 4 | NE |
| NP_001040562 | Zhx3 | zinc fingers and homeoboxes 3 | NE, NP |
| Nuclear hormone receptors | |||
| NP_599227 | Dnttip1 | deoxynucleotidyltransferase, terminal, interacting protein 1 | NE |
| NP_001008511 | Esrra | estrogen related receptor, alpha | NE |
| NP_976081 | Esrrg | estrogen-related receptor gamma | NE |
| NP_113814 | Nr1 h2 | nuclear receptor subfamily 1, group H, member 2 | NP |
| NP_542956 | Nr2f2 | nuclear receptor subfamily 2, group F, member 2 | NE |
| NP_036708 | Nr3c1 | nuclear receptor subfamily 3, group C, member 1 | NP |
| NP_478117 | Sf1 | splicing factor 1 isoform 2 | NP |
| Zinc finger transcription factors | |||
| NP_001099559 | Ash2l | ash2 (absent, small, or homeotic)-like | NE |
| NP_446008 | Bud31 | BUD31 homolog | NE |
| NP_114012 | Ctcf | CCCTC-binding factor (zinc finger protein) | NE, NP |
| NP_001101986 | Dpf2 | D4, zinc and double PHD fingers family 2 | NE, NP |
| NP_001099893 | Evi1 | ecotropic viral integration site 1 | NE |
| NP_001029098 | Fhl1 | four and a half LIM domains 1 isoform 1 | Cyto |
| NP_001101293 | Gfi1b | growth factor independent 1B transcription repressor | NE |
| XP_218939 | Hbxap | similar to remodeling and spacing factor 1 | Cyto |
| NP_001100647 | Jarid1b | jumonji, AT rich interactive domain 1B | NP |
| NP_112397 | Klf10 | Kruppel-like factor 10 | NE |
| NP_445988 | Klf15 | Kruppel-like factor 15 | Cyto |
| XP_001072513 | LOC684924 | similar to zinc finger protein 449 | NP |
| XP_001062820 | LOC685209 | similar to Zinc finger BED domain containing protein 4 | Cyto |
| XP_001067699 | LOC688634 | similar to Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 4) (Querkopf protein) | NE |
| NP_001094368 | Mtf2 | metal response element binding transcription factor 2 | NE |
| NP_851595 | Myst2 | MYST histone acetyltransferase 2 | NE |
| NP_001099501 | Np | nucleoside phosphorylase | Cyto |
| NP_001103962 | Phf14 | PHD finger protein 14 | Cyto |
| NP_001100812 | Phf2 | PHD finger protein 2 | NE |
| NP_001071116 | Prdm2 | retinoblastoma protein-binding zinc finger protein | Cyto |
| NP_001005893 | Repin1 | replication initiator 1 | NE |
| XP_219346 | RGD1305903 | similar to mesenchymal stem cell protein DSC43 | NE |
| XP_001061052 | RGD1310645 | similar to Zinc finger protein 407 | NE,NP |
| XP_001057325 | RGD1359201 | similar to CG15011-PA | Cyto |
| XP_001067122 | RGD1560834 | similar to zinc finger and BTB domain containing 41 | Cyto |
| XP_233885 | RGD1561526 | similar to zinc finger protein 512 | NP |
| XP_234528 | RGD1563945 | similar to PHD finger protein 16 | NE |
| XP_001076564 | RGD1564807 | similar to zinc finger protein, subfamily 1A, 5 | NP |
| NP_001128016 | RGD1565545 | hypothetical protein LOC308337 | Cyto |
| NP_997714 | Ring1 | ring finger protein 1 | NE |
| NP_001094197 | Rufy1 | RUN and FYVE domain containing 1 | NE |
| NP_695222 | St18 | suppression of tumorigenicity 18 | NE |
| XP_223196 | Wdfy3 | similar to WD repeat and FYVE domain containing 3 | NP |
| NP_775412 | Yy1 | YY1 transcription factor | NE, NP |
| NP_001100567 | Zbtb11 | zinc finger and BTB domain containing 11 | NE |
| NP_001099350 | Zbtb20 | zinc finger and BTB domain containing 20 | NE, NP |
| NP_001124009 | Zbtb39 | zinc finger and BTB domain containing 39 | Cyto |
| NP_446454 | Zbtb7a | zinc finger and BTB domain containing 7a | NE |
| NP_001010963 | Zc3 h15 | erythropoietin 4 immediate early response | NE |
| NP_001028873 | Zeb2 | zinc finger E-box binding homeobox 2 | NE, Cyto |
| NP_001101283 | Zfp217 | zinc finger protein 217 | NE |
| XP_001059668 | Zfp236 | similar to Zinc finger protein 236 | NE, Cyto |
| NP_001100701 | Zfp278 | zinc finger protein 278 | Cyto |
| NP_001100591 | Zfp316 | zinc finger protein 316 | NE |
| NP_001128057 | Zfp426l2 | zinc finger protein 426 | NP |
| NP_877975 | Zfp472 | zinc finger protein 472 | NE |
| NP_714953 | Zfp709 | zinc finger protein 709 | NP |
| NP_001101279 | Znf512b | zinc finger protein 512B | NE |
| NP_001019429 | Znf574 | zinc finger protein 574 | Cyto |
| NP_001132956 | Znf644 | zinc finger protein 644 | NP, Cyto |
| NP_001073676 | Znf652 | zinc finger protein 652 | NP |
| XP_001080236 | Zzef1 | similar to zinc finger, ZZ type with EF hand domain 1 | Cyto |
| Other transcription factors | |||
| XP_219832 | Aff2 | similar to AF4/FMR2 family member 2 (Fragile X mental retardation protein 2 homolog) | NP |
| XP_341162 | Ahctf1 | similar to transcription factor ELYS | NE, Cyto |
| NP_446456 | Cand1 | cullin-associated and neddylation-dissociated 1 | NE, NP, Cyto |
| NP_001101391 | Casp8ap2 | caspase 8 associated protein 2 | NE |
| NP_001013209 | Cbfb | core-binding factor, beta subunit | NE |
| NP_445979 | Cdc5l | CDC5 cell division cycle 5-like | NE |
| NP_001028242 | Cip29 | cytokine induced protein 29 kDa | NE |
| NP_446118 | Dll3 | delta-like 3 | Cyto |
| NP_001011914 | Dr1 | down-regulator of transcription 1 | NE |
| NP_942046 | Eif3 h | eukaryotic translation initiation factor 3, subunit H | Cyto |
| NP_001102912 | Erh | enhancer of rudimentary homolog | NE |
| NP_001100552 | Etv5 | ets variant 5 | Cyto |
| NP_001014192 | Fam48a | transcription factor (p38 interacting protein) | NE |
| NP_001012137 | Fus | fusion, derived from t(12;16) malignant liposarcoma | NE, Cyto |
| NP_001041351 | Ilf2 (Nf45) | interleukin enhancer binding factor 2 | NE,NP |
| XP_001076183 | LOC500591 | similar to calmodulin-binding transcription activator 1 | Cyto |
| XP_001069951 | LOC503338 | similar to HBxAg transactivated protein 2 | Cyto |
| XP_001057305 | LOC681004 | similar to GC-rich sequence DNA-binding factor homolog isoform 2 | NE |
| XP_001081073 | LOC688079 | similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor | NE |
| NP_001103001 | LOC689296 | hypothetical protein LOC689296 | Cyto |
| NP_001101145 | Maml3 | mastermind like 3 | NE |
| NP_001011999 | Morf4l1 | mortality factor 4 like 1 | NE |
| NP_001007715 | Morf4l2 | mortality factor 4 like 2 | Cyto |
| NP_113754 | Nfib | nuclear factor I/B | NE |
| NP_113755 | Nfic | nuclear factor I/C | NE |
| XP_342347 | Nfkb1 | similar to Nuclear factor NF-kappa-B p105 subunit (DNA-binding factor KBF1) (EBP-1) | NE, NP |
| NP_036997 | Nfya | nuclear transcription factor Y, alpha | NE |
| NP_113741 | Nfyb | nuclear transcription factor-Y beta | NE |
| NP_001004206 | Pa2 g4 | ErbB3-binding protein 1 | NE, NP |
| NP_001099311 | Ptrf | polymerase I and transcript release factor | NE,NP, Cyto |
| NP_071786 | Pttg1 | pituitary tumor-transforming 1 | NP |
| XP_001063244 | Pura | similar to Transcriptional activator protein Pur-alpha (Purine-rich single-stranded DNA-binding protein alpha) | NE, NP, Cyto |
| NP_001017503 | Purb | purine rich element binding protein B | NE, Cyto |
| XP_001071121 | Rb1 | similar to Retinoblastoma-associated protein (PP105) (RB) | NE, NP |
| NP_001099414 | Rfx1 | regulatory factor X, 1 (influences HLA class II expression) | NE |
| XP_001056829 | RGD1308009 | similar to CCR4-NOT transcription complex, subunit 1 isoform a | NE, Cyto |
| XP_001080950 | RGD1311017 | similar to RIKEN cDNA 4732497O03 | NP |
| XP_001061499 | RGD1560020 | similar to Myb proto-oncogene protein (C-myb) | NE |
| NP_001102749 | RGD1561926 | hypothetical protein LOC500695 | NP |
| XP_220843 | RGD1562272 | similar to TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor | Cyto |
| XP_228426 | RGD1564748 | similar to Mortality factor 4-like protein 2 (MORF-related gene X protein) | NP |
| NP_001012004 | Rnf25 | ring finger protein 25 | NE |
| NP_001008290 | Sbds | Shwachman-Bodian-Diamond syndrome homolog | NE, NP |
| NP_001007713 | Sdpr | serum deprivation response | NP |
| NP_001100834 | Sfmbt2 | Scm-like with four mbt domains 2 | NE |
| NP_001102231 | Sin3a | SIN3 homolog A, transcription regulator | NE,NP |
| NP_001108510 | Sin3b | SIN3 homolog B, transcription regulator | NE, NP, Cyto |
| NP_062064 | Smad2 | SMAD family member 2 | NP |
| NP_037227 | Smad3 | SMAD family member 3 | NE |
| NP_062148 | Smad4 | SMAD family member 4 | NE |
| NP_110485 | Smad7 | SMAD family member 7 | NE |
| NP_112383 | Ssrp1 | Structure specific recognition protein 1 | NE, NP |
| NP_036879 | Stat3 | signal transducer and activator of transcription 3 | NE, NP |
| NP_001011979 | Tardbp | TAR DNA binding protein | NE, NP, Cyto |
| NP_001099921 | Tbx15 | T-box 15 | NE |
| NP_001100504 | Tbx4 | T-box 4 | NE |
| NP_001124046 | Tcf20 | transcription factor 20 | NP |
| NP_001128186 | Tcfcp2 | transcription factor CP2 | NE, NP |
| NP_001100640 | Tcfcp2l1 | transcription factor CP2-like 1 | NP |
| NP_001032431 | Tcfcp2l2 | transcription factor CP2-like 2 | Cyto |
| XP_001069278 | Tead1 | similar to Transcriptional enhancer factor TEF-1 (TEA domain family member 1) isoform 2 | NE, NP |
| NP_001100317 | Tfdp2 | transcription factor Dp-2 (E2F dimerization partner 2) | Cyto |
| NP_001009693 | Thrap3 | thyroid hormone receptor associated protein 3 | NE, NP |
| NP_001020136 | Trappc2 | trafficking protein particle complex 2 | NE |
| NP_001128309 | Trps1 | trichorhinophalangeal syndrome I homolog | NP, Cyto |
| XP_001076644 | Ubp1 | similar to upstream binding protein 1 (LBP-1a) | NP |
| NP_001099193 | Ubtf | upstream binding transcription factor, RNA polymerase I isoform 1 | NE, NP |
| NP_620809 | Xab2 | XPA-binding protein 2 | NE |
| NP_113751 | Ybx1 | Y box binding protein 1 | NE, NP, Cyto |
| XP_001079683 | Ybx2 | similar to Y-box-binding protein 2 (Germ cell-specific Y-box-binding protein) (FRGY2 homolog) | NE |
NE, soluble nuclear fraction; NP, nuclear membrane pellet; Cyto, pooled cytoplasmic fractions.