TABLE 2.
Probea | GenBank accession no. | Tm (°C)b | Sequence (5′→3′)c | Source or reference |
---|---|---|---|---|
tetm-AP | X90939 | 61.70 | 2711CTTTCCTCTTGTTCGAGTTCC2691 | This study |
tetm-SP | X90939 | 61.46 | 3049AATGAGTTTTTGAAGTTAAATAGTGTTCTT3078 | This study |
teto-AP | Y07780 | 63.87 | 164CGTCAACGTGAGCCAGAA147 | This study |
teto-SP | Y07780 | 62.20 | 641GAACAGTGGGATGCGGTA658 | This study |
int-AP | U09422 | 60.64 | 16905CGTAAAGCTGGCAGAGTGT16887 | 37 |
int-SP | U09422 | 59.02 | 17321AGAGTTTGGTGGTTTGACAC17340 | 37 |
xis-AP | X61025 | 63.49 | 274GGTTAGGGTATAACGTTCCCAAA252 | This study |
xis-SP | X61025 | 63.14 | 368GGCAATCGTATTCAGATTAAACG390 | This study |
tnpR-AP | AM490850 | 67.79 | 6682CAAATTCCCCGTAGGCGCTA6663 | This study |
tnpR-SP | AM490850 | 61.75 | 8149TGTAAAAAAGTGGAAGTGATTGC8171 | This study |
tnpA-AP | AM490850 | 62.05 | 8239GTCTAGCTAGCTGAAGAAACCTGTT8215 | This study |
tnpA024-SP | AM490850 | 61.54 | 10261GTAACTAAGTATATGAAGCATGTATCTCCT10290 | This study |
ermb-AP | M11180 | 58.50 | 876TTACCTGTTTACTTATTTTAGCCAG852 | 37 |
ermb-SP | M11180 | 61.98 | 1236CTTACCCGCCATACCACA1253 | 37 |
mef(A/E)-AP | AF227521 | 60.04 | 3353CAAGATGGCACTAGTGATTAATG3331 | 37 |
mef(A)-SP | AF227521 | 60.04 | 3632GGCTCTCAATGCGGTTAC3649 | 37 |
msrD-AP | AF227520 | 61.99 | 5524ACAGTGCCTTATCCCCAAATA5504 | This study |
msrD-SP | AF227520 | 61.61 | 5580TAATGGAACCGGAAAAACAA5599 | This study |
mel-AP | AF376746 | 61.05 | 3493AGGGTTTTAGCAGCATTATACATC3470 | This study |
mel-SP | AF376746 | 60.58 | 3601TCGGTGCAGAAATTAATAAAGTATT3625 | This study |
mefI-AP | AJ971089 | 62.80 | 2397GGGATTTAACGGCATTATGC2378 | This study |
mefI-SP | AJ971089 | 60.64 | 2506TCGGTACGGAAATTACTAAAATATTT2531 | This study |
aphA3-SP | AF060241 | 59.63 | 891ATCATGCCGTTCAAAGTG874 | 38 |
aphA3-AP | AF060241 | 59.72 | 1341GGAAGAACAGTATGTCGAGC1360 | 38 |
cat-AP | V01277 | 60.72 | 1372AAAACACTAATATCAATTTCTGTGGTT1346 | This study |
cat-232-SP | V01277 | 65.55 | 1616GGTTATTGGGATAAGTTAGAGCCACTTTAT1637 | This study |
Amine-labeled probe.
Tm, melting temperatures provided by manufacturer.
Numbers relate to positions in GenBank sequences.