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. 2010 Jan 11;54(3):1152–1159. doi: 10.1128/AAC.01268-09

TABLE 2.

Oligonucleotide probes used in this study

Probea GenBank accession no. Tm (°C)b Sequence (5′→3′)c Source or reference
tetm-AP X90939 61.70 2711CTTTCCTCTTGTTCGAGTTCC2691 This study
tetm-SP X90939 61.46 3049AATGAGTTTTTGAAGTTAAATAGTGTTCTT3078 This study
teto-AP Y07780 63.87 164CGTCAACGTGAGCCAGAA147 This study
teto-SP Y07780 62.20 641GAACAGTGGGATGCGGTA658 This study
int-AP U09422 60.64 16905CGTAAAGCTGGCAGAGTGT16887 37
int-SP U09422 59.02 17321AGAGTTTGGTGGTTTGACAC17340 37
xis-AP X61025 63.49 274GGTTAGGGTATAACGTTCCCAAA252 This study
xis-SP X61025 63.14 368GGCAATCGTATTCAGATTAAACG390 This study
tnpR-AP AM490850 67.79 6682CAAATTCCCCGTAGGCGCTA6663 This study
tnpR-SP AM490850 61.75 8149TGTAAAAAAGTGGAAGTGATTGC8171 This study
tnpA-AP AM490850 62.05 8239GTCTAGCTAGCTGAAGAAACCTGTT8215 This study
tnpA024-SP AM490850 61.54 10261GTAACTAAGTATATGAAGCATGTATCTCCT10290 This study
ermb-AP M11180 58.50 876TTACCTGTTTACTTATTTTAGCCAG852 37
ermb-SP M11180 61.98 1236CTTACCCGCCATACCACA1253 37
mef(A/E)-AP AF227521 60.04 3353CAAGATGGCACTAGTGATTAATG3331 37
mef(A)-SP AF227521 60.04 3632GGCTCTCAATGCGGTTAC3649 37
msrD-AP AF227520 61.99 5524ACAGTGCCTTATCCCCAAATA5504 This study
msrD-SP AF227520 61.61 5580TAATGGAACCGGAAAAACAA5599 This study
mel-AP AF376746 61.05 3493AGGGTTTTAGCAGCATTATACATC3470 This study
mel-SP AF376746 60.58 3601TCGGTGCAGAAATTAATAAAGTATT3625 This study
mefI-AP AJ971089 62.80 2397GGGATTTAACGGCATTATGC2378 This study
mefI-SP AJ971089 60.64 2506TCGGTACGGAAATTACTAAAATATTT2531 This study
aphA3-SP AF060241 59.63 891ATCATGCCGTTCAAAGTG874 38
aphA3-AP AF060241 59.72 1341GGAAGAACAGTATGTCGAGC1360 38
cat-AP V01277 60.72 1372AAAACACTAATATCAATTTCTGTGGTT1346 This study
cat-232-SP V01277 65.55 1616GGTTATTGGGATAAGTTAGAGCCACTTTAT1637 This study
a

Amine-labeled probe.

b

Tm, melting temperatures provided by manufacturer.

c

Numbers relate to positions in GenBank sequences.