Table 1. Genome sequences from species in the Aspergillus clade.
All publicly available Aspergillus genome sequences are accessible at http://www.cadre-genomes.org.uk/
|
Aspergillus Species |
Sequencers | Annotation methods |
References | Links and Accession Numbers to Sequences |
|---|---|---|---|---|
|
A. nidulans (Emericella nidulans FGSC A4) |
Broad Institute | Calhoun annotation system, including FGENESH (Salamov, and Solovyev, 2000); FGENESH+; and GENEWISE (Birney et al., 2004) |
Galagan et al. (2005) | Genbank: AACD00000000 http://www.broad.mit.edu/annotation/genome/aspergillus_group/ |
|
A. fumigatus (Af293) |
The Institute for Genome Research (TIGR) |
TIGR annotation pipeline, including GlimmerM; Exonomy; Unveil (Majoros et al., 2003); and GeneSplicer (Pertea et al., 2001) plus manual annotation |
Nierman et al. (2005) | Genbank: AAHF00000000 http://www.tigr.org/tdb/e2k1/afu1/ |
|
A. oryzae (RIB40) |
National Institute of Advanced Industrial Science and Technology (AIST)/ National Institute of Technology and Evaluation (NITE) |
AIST annotation pipeline including ALN (Gotoh, 2000); GeneDecoder (Asai et al., 1998); and GlimmerM |
Machida et al. (2005) | DDBJ: AP007150 – AP007177 http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ao |
|
A. niger (CBS 513.88) |
DSM Food Specialties/ Biomax Informatics AG |
Pedant-Pro™ Sequence Analysis Suite plus manual annotation by Aspergillus research community |
Pel et al. (2007) | EMBL: AM270980 – AM270998 http://www.dsm.com/en_US/html/dfs/genomics_aniger.htm/ |
|
A. niger (ATCC 1015) |
Joint Genome Institute (JGI) |
JGI annotation pipeline including FGENESH; FGENESH+; and GENEWISE |
http://genome.jgi-psf.org/Aspni1/ | |
|
A. fumigatus (A1163) |
J. Craig Venter Institute (JCVI)/ Merck & Co. |
JCVI annotation pipeline including GlimmerHMM (Majoros et al., 2004); Genezilla (Majoros et al., 2004); SNAP (Korf, 2004); Genewise; Twinscan (Flicek et al., 2003); PASA (Haas et al., 2003); and EvidenceModeler (Haas et al., 2008) |
Fedorova et al. (2008) | GenBank: ABDB00000000 |
|
A. clavatus (NRRL1) |
J. Craig Venter Institute (JCVI) |
JCVI annotation pipeline including GlimmerHMM; Genezilla; SNAP; Genewise; Twinscan; PASA; and EvidenceModeler |
Fedorova et al. (2008) | GenBank: AAKD00000000 http://www.tigr.org/tdb/e2k1/acla1/ |
|
A. fischerianus (Neosartorya fischeri NRRL181) |
J. Craig Venter Institute (JCVI) |
JCVI annotation pipeline including GlimmerHMM; Genezilla; SNAP; Genewise; Twinscan; PASA; and EvidenceModeler |
Fedorova et al. (2008) | GenBank: AAKE00000000 http://www.tigr.org/tdb/e2k1/nfa1/ |
|
A. terreus (NIH 2624) |
Broad Institute | Calhoun annotation system, including FGENESH; GENEID (Parra et al., 2000); and GENEWISE |
Genbank: AAJN00000000 http://www.broad.mit.edu/annotation/genome/aspergillus_group/ |
|
|
A. flavus (NRRL 3357) |
North Carolina State University/ J. Craig Venter Institute (JCVI) |
JCVI annotation pipeline including GlimmerHMM; Genezilla; SNAP; Genewise; Twinscan; PASA; and EvidenceModeler |
Genbank: AAIH00000000 http://www.aspergillusflavus.org/genomics/ |