Table 1.
Summary of two-state exchange parameters for individual and groups of residues in substrate-free arginine kinase.
Individual Fits |
Collective Fits |
|||||||
---|---|---|---|---|---|---|---|---|
Residue | 2° | kex [s−1] | pB (%) | |Δω| [ppm] | kex [s−1] | pB (%) | |Δω| [ppm] | |
NTD HINGE | D88 | α4 | 3200 ± 240 | 0.3 ± 0.1 | 1.9 ± 0.3 | 1930 ± 350 | 0.4 ± 0.1 | 3.2 ± 0.3 |
H90 | α4 | 1020 ± 480 | 0.4 ± 0.1 | 4.5 ± 0.5 | 4.4 ± 0.6 | |||
G92 | L4 | 1560 ± 760 | 0.3 ± 0.1 | 5.1 ± 0.6 | 3.4 ± 0.4 | |||
NTD-CTD INTERFACE | D71 | L3 | * | * | * | 800 ± 100 | 1.1 ± 0.1 | 1.1 ± 0.1 |
F136 | L6 | |||||||
N137 | L6 | 1150 ± 160 | 1.9 ± 0.7 | 0.9 ± 0.6 | 1.7 ± 0.2 | |||
F270 | L11 | 2830 ± 230 | 0.9 ± 0.8 | 2.3 ± 0.5 | 2.4 ± 0.4 | |||
C271 | L11 | * | * | * | 0.9 ± 0.3 | |||
N274 | L11 | 1100 ± 710 | 0.6 ± 0.1 | 3.6 ± 0.7 | 1.6 ± 0.2 | |||
G276 | L11 | 1930 ± 340 | 1.4 ± 0.4 | 3.0 ± 0.6 | 3.8 ± 0.5 | |||
G332 | L14 | 1330 ± 320 | 1.5 ± 2.1 | 1.5 ± 1.0 | 1.5 ± 0.1 | |||
DYNAMIC DOMAIN 1 AND HINGE | R126 | β1 | 690 ± 220 | 0.3 ± 0.1 | 2.9 ± 0.3 | 790 ± 70 | 0.4 ± 0.1 | 2.2 ± 0.3 |
C127 | β1 | 940 ± 550 | 0.2 ± 0.1 | 3.7 ± 0.6 | 1.9 ± 2.3 | |||
R129 | β1 | 950 ± 450 | 0.3 ± 0.1 | 5.6 ± 0.4 | 5.6 ± 0.2 | |||
V220 | β4 | 2360 ± 210 | 1.0 ± 0.1 | 1.3 ± 0.1 | 2.7 ± 3.0 | |||
V222 | β4 | * | * | * | 1.7 ± 0.6 | |||
R229 | β5 | 360 ± 350 | 0.3 ± 0.2 | 2.5 ± 0.4 | 1.7 ± 0.1 | |||
Q234 | β5 | * | * | * | 1.0 ± 1.0 | |||
SUBSTRATE BINDING LOOP L8 | I182 | α7 | 700 ± 420 | 0.5 ± 0.2 | 4.5 ± 0.4 | 790 ± 60 | 2.6 ± 0.6 | 0.8 ± 0.4 |
D183 | α7 | * | * | * | * | |||
D184 | α7 | 2730 ± 1760 | 0.5 ± 1.3 | 3.1 ± 4.5 | 0.6 ± 0.3 | |||
H185 | α7 | 1810 ± 650 | 0.3 ± 0.1 | 5.1 ± 0.6 | 0.8 ± 0.4 | |||
E190 | L8 | 990 ± 70 | 4.5 ± 0.6 | 1.6 ± 0.1 | 2.4 ± 0.8 | |||
G191 | L8 | * | * | * | * | |||
D192 | L8 | 760 ± 90 | 1.7 ± 0.4 | 1.3 ± 0.2 | 1.0 ± 0.2 | |||
R193 | L8 | 1470 ± 390 | 0.5 ± 0.1 | 4.4 ± 0.4 | 1.0 ± 0.5 | |||
T197 | L8 | 3660 ± 1360 | 0.5 ± 0.1 | 6.8 ± 1.3 | 1.1 ± 0.9 | |||
A198 | L8 | 4190 ± 1160 | 0.0 ± 1.2 | 2.6 ± 1.6 | * | |||
A200 | L8 | 1610 ± 440 | 0.7 ± 0.1 | 4.6 ± 0.5 | 1.3 ± 0.7 | |||
C201 | L8 | 510 ± 230 | 1.3 ± 0.1 | 1.9 ± 0.3 | 1.2 ± 0.1 | |||
R202 | L8 | 1300 ± 220 | 0.0 ± 0.0 | 0.8 ± 0.1 | 0.8 ± 0.6 | |||
T206 | L8 | 570 ± 50 | 2.6 ± 0.2 | 1.7 ± 0.1 | 1.7 ± 0.2 | |||
G207 | L8 | 1350 ± 140 | 0.0 ± 0.0 | 0.8 ± 0.1 | 0.7 ± 0.3 | |||
R208 | L8 | 920 ± 180 | 0.6 ± 0.1 | 3.8 ± 0.2 | 1.1 ± 0.1 | |||
G209 | β3 | 1450 ± 380 | 0.7 ± 0.2 | 3.3 ± 0.6 | 1.1 ± 0.2 |
Secondary structure of each residue is denoted with 2° as observed in the substrate-free crystal structure of arginine kinase. In all cases, fitting was performed assuming a two-state exchange model, where kex is the sum of forward and reverse rate constants, pB is the relative population of the higher energy state, and Δω is the chemical shift difference between the two states. Asterisks denote residues for which fitting did not converge.