Table 5.
PGA and treecat results using multiple references
| PGA | treecat | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Organism | TP | FP | TPR | PPV | TP | FP | TPR | PPV | |
| C. aurimucosum | 14.5 (16) | 66.5 (70) | 0.13 (0.15) | 0.18 (0.19) | 17 | 66 | 0.16 | 0.20 | |
| C. kroppenstedtii | 2.0 (2) | 4.0 (4) | 0.22 (0.22) | 0.33 (0.33) | 3 | 6 | 0.33 | 0.33 | |
| C. urealyticum | 20.9 (25) | 72.5 (76) | 0.30 (0.36) | 0.22 (0.25) | 27 | 70 | 0.39 | 0.28 | |
Evaluation of applying PGA and treecat for ordering the sets of contigs with the help of the remaining genomes as references. PGA's results are averaged over 20 runs, the best run (highest TP with lowest FP) is given in parentheses. The overal best result is printed in bold face.