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. 2009 Dec 22;49(5):843–852. doi: 10.1021/bi901743k

Table 1. Parameters Used To Model the Dissociation of DCC-SSB from Different Lengths of ssDNA, Induced by wtSSBa.

  dT70 dT35 poly(dT)
fluorescence enhancementb      
initial complex 4.5 4.0 4.3
other intermediates 1.6 2.0 2.6
k+1 (μM−1 s−1) 4.9 6.0 42
k+2 (μM−1 s−1) 3.4 0.61 33
k−2 (s−1)c 0.3 0.3 0.3
k+3 (s−1)c 9.7 9.7 9.7
a

The models are shown in the schemes in Figure 5, and rate constants are defined such that step n has forward and reverse rate constants k+n and kn, respectively.

b

This ratio is the fluorescence of DNA-bound DCC-SSB relative to that of free DCC-SSB for either the initial complex, bound in the 70-base mode, or all other intermediates in the schemes, which may be in approximately the 35-base mode. The exception was the assumption that DCC-SSB·wtSSB·dT35 had the same fluorescence as free DCC-SSB.

c

The values for these two rate constants were optimized for the poly(dT) trace and those values fixed for other DNA lengths.