Table 1. Parameters Used To Model the Dissociation of DCC-SSB from Different Lengths of ssDNA, Induced by wtSSBa.
| dT70 | dT35 | poly(dT) | |
|---|---|---|---|
| fluorescence enhancementb | |||
| initial complex | 4.5 | 4.0 | 4.3 |
| other intermediates | 1.6 | 2.0 | 2.6 |
| k+1 (μM−1 s−1) | 4.9 | 6.0 | 42 |
| k+2 (μM−1 s−1) | 3.4 | 0.61 | 33 |
| k−2 (s−1)c | 0.3 | 0.3 | 0.3 |
| k+3 (s−1)c | 9.7 | 9.7 | 9.7 |
The models are shown in the schemes in Figure 5, and rate constants are defined such that step n has forward and reverse rate constants k+n and k−n, respectively.
This ratio is the fluorescence of DNA-bound DCC-SSB relative to that of free DCC-SSB for either the initial complex, bound in the 70-base mode, or all other intermediates in the schemes, which may be in approximately the 35-base mode. The exception was the assumption that DCC-SSB·wtSSB·dT35 had the same fluorescence as free DCC-SSB.
The values for these two rate constants were optimized for the poly(dT) trace and those values fixed for other DNA lengths.