Table 4.
Polymorphism character and position in reference sequence.
| Gene | Position | Polymorphism | Position in reference sequence |
|---|---|---|---|
| PAL | 947 | Intron SNP | TTTAGAGACGATCGCAATCCA(C/T) |
| 1652,1655 | Intron SNP | CCTTGTGCGCTGGCTCCC(T/C)TT(C/T) | |
| 4CL2 | 192 | synonymous SNP | TACTGCTTCGGGAAGATGGG(T/C) |
| 217 | Val to Ile SNP | TGGCGGAGCGGGCGTGCCTG(G/A) | |
| COMT | 2358 | 3'UTR indel | CGCCGTCGTCGTCTTCTTCT(+/-) |
| F5H | 65 | Leu to Pro SNP | ACGCGCGACAATATCAAGGC(T/C) |
| 4CL1 | 454 | Exon indel | TTCGTCGGCAAGGTGCGGGGG(+/-) |
| 810s | Exon indel | GCTGTGCGGGATGCGCGCCGG(+/-) | |
| CCoAOMT2 | 75 | Exon Indel | CAGGCCAACGGCAACGGCAA(+/-) |
| 144 | synonymous SNP | CTGCTCAAGAGCGACGACCT(C/G) | |
| 406 | Intron SNP | ACCGAGATCTGAGAACGAAC(A/G) | |
| 663 | Intron indel | CCTAGGATCTTAACCACCCC(+/-) |
Polymorphism character and position in reference sequence. (N/N): SNP substitution; (+/-): indel; s: singleton; M73235, AY323238, AY279014, AX204867, AX204868, and AX204869 were used as reference sequences for COMT, CCoAOMT1, CCoAOMT2, 4CL1, 4CL2, and F5H respectively. The reference sequences for PAL are the conserved sequences before each polymorphism in our alignment.