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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1988 Dec;85(24):9664–9668. doi: 10.1073/pnas.85.24.9664

Rapid detection of human chromosome 21 aberrations by in situ hybridization.

P Lichter 1, T Cremer 1, C J Tang 1, P C Watkins 1, L Manuelidis 1, D C Ward 1
PMCID: PMC282830  PMID: 2974158

Abstract

Plasmid clones containing up to 94 kilobases of single-copy DNA from band q22.3 of chromosome 21 and a complete pool of insert DNA from a chromosome 21 recombinant library have been used to rapidly detect numerical and structural aberrations of chromosome 21 by in situ hybridization in both metaphase and interphase cells. A trisomic karyotype, diagnostic of Down syndrome, is readily detected in nonmitotic cells because the majority of their nuclei exhibit three discrete foci of hybridization, in contrast to normal diploid cells, which show two foci. Chromosomal translocations involving chromosome 21 sequences were also detected with these probes, and the intranuclear location of 21q22.3 DNA sequences in "normal" human brain neurons was established with the plasmid DNA probe set. These results suggest that chromosome 21-specific probes may have utility in clinical diagnostics, especially by facilitating the direct analysis of interphase cells.

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Selected References

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  1. Albertson D. G., Fishpool R., Sherrington P., Nacheva E., Milstein C. Sensitive and high resolution in situ hybridization to human chromosomes using biotin labelled probes: assignment of the human thymocyte CD1 antigen genes to chromosome 1. EMBO J. 1988 Sep;7(9):2801–2805. doi: 10.1002/j.1460-2075.1988.tb03135.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Bhatt B., Burns J., Flannery D., McGee J. O. Direct visualization of single copy genes on banded metaphase chromosomes by nonisotopic in situ hybridization. Nucleic Acids Res. 1988 May 11;16(9):3951–3961. doi: 10.1093/nar/16.9.3951. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Brigati D. J., Myerson D., Leary J. J., Spalholz B., Travis S. Z., Fong C. K., Hsiung G. D., Ward D. C. Detection of viral genomes in cultured cells and paraffin-embedded tissue sections using biotin-labeled hybridization probes. Virology. 1983 Apr 15;126(1):32–50. doi: 10.1016/0042-6822(83)90460-9. [DOI] [PubMed] [Google Scholar]
  4. Cremer T., Landegent J., Brückner A., Scholl H. P., Schardin M., Hager H. D., Devilee P., Pearson P., van der Ploeg M. Detection of chromosome aberrations in the human interphase nucleus by visualization of specific target DNAs with radioactive and non-radioactive in situ hybridization techniques: diagnosis of trisomy 18 with probe L1.84. Hum Genet. 1986 Dec;74(4):346–352. doi: 10.1007/BF00280484. [DOI] [PubMed] [Google Scholar]
  5. Cremer T., Tesin D., Hopman A. H., Manuelidis L. Rapid interphase and metaphase assessment of specific chromosomal changes in neuroectodermal tumor cells by in situ hybridization with chemically modified DNA probes. Exp Cell Res. 1988 Jun;176(2):199–220. doi: 10.1016/0014-4827(88)90325-4. [DOI] [PubMed] [Google Scholar]
  6. Devilee P., Cremer T., Slagboom P., Bakker E., Scholl H. P., Hager H. D., Stevenson A. F., Cornelisse C. J., Pearson P. L. Two subsets of human alphoid repetitive DNA show distinct preferential localization in the pericentric regions of chromosomes 13, 18, and 21. Cytogenet Cell Genet. 1986;41(4):193–201. doi: 10.1159/000132229. [DOI] [PubMed] [Google Scholar]
  7. Goldgaber D., Lerman M. I., McBride O. W., Saffiotti U., Gajdusek D. C. Characterization and chromosomal localization of a cDNA encoding brain amyloid of Alzheimer's disease. Science. 1987 Feb 20;235(4791):877–880. doi: 10.1126/science.3810169. [DOI] [PubMed] [Google Scholar]
  8. Julien C., Bazin A., Guyot B., Forestier F., Daffos F. Rapid prenatal diagnosis of Down's syndrome with in-situ hybridisation of fluorescent DNA probes. Lancet. 1986 Oct 11;2(8511):863–864. doi: 10.1016/s0140-6736(86)92900-4. [DOI] [PubMed] [Google Scholar]
  9. Kaplan J. C., Carritt B. Report of the committee on the genetic constitution of chromosomes 20, 21, and 22. Cytogenet Cell Genet. 1987;46(1-4):257–276. doi: 10.1159/000132480. [DOI] [PubMed] [Google Scholar]
  10. Landegent J. E., Jansen in de Wal N., Dirks R. W., Baao F., van der Ploeg M. Use of whole cosmid cloned genomic sequences for chromosomal localization by non-radioactive in situ hybridization. Hum Genet. 1987 Dec;77(4):366–370. doi: 10.1007/BF00291428. [DOI] [PubMed] [Google Scholar]
  11. Lawrence J. B., Villnave C. A., Singer R. H. Sensitive, high-resolution chromatin and chromosome mapping in situ: presence and orientation of two closely integrated copies of EBV in a lymphoma line. Cell. 1988 Jan 15;52(1):51–61. doi: 10.1016/0092-8674(88)90530-2. [DOI] [PubMed] [Google Scholar]
  12. Manuelidis L., Borden J. Reproducible compartmentalization of individual chromosome domains in human CNS cells revealed by in situ hybridization and three-dimensional reconstruction. Chromosoma. 1988;96(6):397–410. doi: 10.1007/BF00303033. [DOI] [PubMed] [Google Scholar]
  13. Manuelidis L. Individual interphase chromosome domains revealed by in situ hybridization. Hum Genet. 1985;71(4):288–293. doi: 10.1007/BF00388453. [DOI] [PubMed] [Google Scholar]
  14. Masiakowski P., Breathnach R., Bloch J., Gannon F., Krust A., Chambon P. Cloning of cDNA sequences of hormone-regulated genes from the MCF-7 human breast cancer cell line. Nucleic Acids Res. 1982 Dec 20;10(24):7895–7903. doi: 10.1093/nar/10.24.7895. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Münke M., Foellmer B., Watkins P. C., Cowan J. M., Carroll A. J., Gusella J. F., Francke U. Regional assignment of six polymorphic DNA sequences on chromosome 21 by in situ hybridization to normal and rearranged chromosomes. Am J Hum Genet. 1988 Apr;42(4):542–549. [PMC free article] [PubMed] [Google Scholar]
  16. Pinkel D., Gray J. W., Trask B., van den Engh G., Fuscoe J., van Dekken H. Cytogenetic analysis by in situ hybridization with fluorescently labeled nucleic acid probes. Cold Spring Harb Symp Quant Biol. 1986;51(Pt 1):151–157. doi: 10.1101/sqb.1986.051.01.018. [DOI] [PubMed] [Google Scholar]
  17. Pinkel D., Straume T., Gray J. W. Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci U S A. 1986 May;83(9):2934–2938. doi: 10.1073/pnas.83.9.2934. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Rappold G. A., Cremer T., Hager H. D., Davies K. E., Müller C. R., Yang T. Sex chromosome positions in human interphase nuclei as studied by in situ hybridization with chromosome specific DNA probes. Hum Genet. 1984;67(3):317–325. doi: 10.1007/BF00291361. [DOI] [PubMed] [Google Scholar]
  19. Schardin M., Cremer T., Hager H. D., Lang M. Specific staining of human chromosomes in Chinese hamster x man hybrid cell lines demonstrates interphase chromosome territories. Hum Genet. 1985;71(4):281–287. doi: 10.1007/BF00388452. [DOI] [PubMed] [Google Scholar]
  20. Sealey P. G., Whittaker P. A., Southern E. M. Removal of repeated sequences from hybridisation probes. Nucleic Acids Res. 1985 Mar 25;13(6):1905–1922. doi: 10.1093/nar/13.6.1905. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Tanzi R. E., Gusella J. F., Watkins P. C., Bruns G. A., St George-Hyslop P., Van Keuren M. L., Patterson D., Pagan S., Kurnit D. M., Neve R. L. Amyloid beta protein gene: cDNA, mRNA distribution, and genetic linkage near the Alzheimer locus. Science. 1987 Feb 20;235(4791):880–884. doi: 10.1126/science.2949367. [DOI] [PubMed] [Google Scholar]
  22. Van Keuren M. L., Watkins P. C., Drabkin H. A., Jabs E. W., Gusella J. F., Patterson D. Regional localization of DNA sequences on chromosome 21 using somatic cell hybrids. Am J Hum Genet. 1986 Jun;38(6):793–804. [PMC free article] [PubMed] [Google Scholar]
  23. Watkins P. C., Tanzi R. E., Cheng S. V., Gusella J. F. Molecular genetics of human chromosome 21. J Med Genet. 1987 May;24(5):257–270. doi: 10.1136/jmg.24.5.257. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Watkins P. C., Tanzi R. E., Gibbons K. T., Tricoli J. V., Landes G., Eddy R., Shows T. B., Gusella J. F. Isolation of polymorphic DNA segments from human chromosome 21. Nucleic Acids Res. 1985 Sep 11;13(17):6075–6088. doi: 10.1093/nar/13.17.6075. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Welcher A. A., Torres A. R., Ward D. C. Selective enrichment of specific DNA, cDNA and RNA sequences using biotinylated probes, avidin and copper-chelate agarose. Nucleic Acids Res. 1986 Dec 22;14(24):10027–10044. doi: 10.1093/nar/14.24.10027. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Wisniewski K. E., Wisniewski H. M., Wen G. Y. Occurrence of neuropathological changes and dementia of Alzheimer's disease in Down's syndrome. Ann Neurol. 1985 Mar;17(3):278–282. doi: 10.1002/ana.410170310. [DOI] [PubMed] [Google Scholar]

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