Table 3.
P-values for a selection of PROSITE patterns of low (or moderate) complexities using the complete proteome of Escherichia coli (NC_000913.faa).
| PROSITE signature | n | Exact | SSA with no offset | SSA (offset) |
|---|---|---|---|---|
| RGD | 215 | 5.35 × 10-1 | 5.91 × 10-1 | 5.55 × 10-1(2) |
| ER_TARGET | 72 | 4.01 × 10-2 | 5.21 × 10-2 | 4.70 × 10-2(2) |
| PPASE | 3 | 2.60 × 10-2 | 2.76 × 10-2 | 2.63 × 10-2(6) |
| ALDEHYDE_DEHYDR_GLU | 12 | 1.99 × 10-5 | 2.41 × 10-5 | 1.95 × 10-5(7) |
| PROKAR_NTER_METHYL | 10 | 6.79 × 10-3 | 8.01 × 10-3 | 5.10 × 10-3(20) |
| GLY_RADICAL_1 | 6 | 1.58 × 10-6 | 1.86 × 10-6 | 1.60 × 10-6(8) |
| PEP_ENZYMES_PHOS_SITE | 4 | 1.49 × 10-10 | 1.74 × 10-10 | 1.49 × 10-10(12) |
| PUR_PYR_PR_TRANSFER | 7 | 2.15 × 10-14 | 2.75 × 10-14 | 2.10 × 10-14(12) |