Table 4.
Exact P-values for a selection of PROSITE patterns of high complexities using the complete proteome of Escherichia coli (NC_000913.faa). We use an order 1 homogeneous Markov model estimated over the data set.
| PROSITE signature | n | Exact |
|---|---|---|
| PILI_CHAPERONE | 10 | 3.27 × 10-46 |
| SIGMA54_INTERACT × 2 | 12 | 1.58 × 10-42 |
| EFACTOR_GTP | 8 | 4.43 × 10-20 |
| ALDEHYDE_DEHYDR_CYS | 11 | 5.63 × 10-9 |
| ADH_ZINC | 12 | 8.93 × 10-16 |
| THIOLASE_1 | 5 | 5.76 × 10-9 |
| SUGAR_TRANSPORT_1 | 18 | 3.75 × 10-8 |
| FGGY_KINASES_2 | 5 | 2.14 × 10-4 |
| PTS_EIIA_TYPE_2_HIS | 8 | 7.19 × 10-19 |
| MOLYBDOPTERIN_PROK_3 | 11 | 2.59 × 10-35 |
| SUGAR_TRANSPORT_2 | 10 | 1.22 × 10-5 |