Table 1.
Genes profiled in study cohort
| Gene (and associated major KEGG pathway) | Full name | GeneID |
|---|---|---|
| ANXA5a | annexin A5 | 308 |
| BCL2L1a | B-cell CLL/lymphoma 2-like 1 | 598 |
| BIRC5 / Survivina | baculoviral IAP repeat-containing 5 | 332 |
| BMP6b | bone morphogenetic protein 6 | 654 |
| CCND3c | cyclin D3 | 896 |
| CDK8c | cyclin-dependent kinase 8 | 1024 |
| CDKN1Ac | cyclin-dependent kinase inhibitor 1A (p21, Cip1) | 1026 |
| CDKN2Ac | cyclin-dependent kinase inhibitor 2A | 1029 |
| E2F1c | E2F transcription factor 1 | 1869 |
| ERBB2d | v-erb-b2 erythroblastic leukemia viral oncogene homolog 2 | 2064 |
| FGFR3e | fibroblast growth factor receptor 3 | 2261 |
| HRASe | v-Ha-ras Harvey rat sarcoma viral oncogene homolog | 3265 |
| ICAM1f | intercellular adhesion molecule 1 | 3383 |
| IGF1d | insulin-like growth factor 1 | 3479 |
| JUNe | jun oncogene | 3725 |
| MAP2K6e | mitogen-activated protein kinase kinase 6 | 5608 |
| MYCe | v-myc myelocytomatosis viral oncogene homolog | 4609 |
| NFKB1e | nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | 4790 |
| PDGFRLg | platelet-derived growth factor receptor-like | 5157 |
| RB1c | retinoblastoma 1 | 5925 |
| STAT3h | signal transducer and activator of transcription 3 | 6774 |
| TP53c | tumor protein p53 | 7157 |
| VEGFg | vascular endothelial growth factor A | 7422 |
| VEGFR2g | kinase insert domain receptor | 3791 |
| TBPi,k | TATA box binding protein | 6908 |
| SDHAj,k | succinate dehydrogenase complex, subunit A, flavoprotein (Fp) | 6389 |
KEGG = Kyoto Encyclopedia of Genes and Genomes; MAPK = mitogen-activated protein kinase.
Major KEGG pathway:
a
Apoptosis.
b
Hedgehog signaling pathway.
c
Cell-cycle regulation.
d
Focal adhesion.
e
MAPK signaling pathway.
f
Cell adhesion.
g
VEGF signaling/tumor angiogenesis.
h
Jak-STAT signaling pathway.
i
Basal transcription factor.
j
Citrate cycle.
k
Reference gene.