TABLE 1.
Genes affected by G, E, and GEI
| Strains |
|||||
|---|---|---|---|---|---|
| Joint analysis (%) | K9 (%) | M22 (%) | RM11-1a (%) | YPS163 (%) | |
| Genetic | 275 (6.4) | 87 (2) | 77 (1.8) | 83 (1.9) | 77 (1.8) |
| Environmental | 3301 (77) | 2953 (69) | 3125 (73) | 3003 (70) | 3301 (77) |
| Additive | 282 (6.6) | 166 (3.9) | 131 (3.1) | 222 (5.2) | 157 (3.7) |
| GEI | 2367 (55) | 1215 (28) | 1744 (41) | 1184 (28) | 1539 (36) |
| Persistent GEI | 1129 (26) | 522 (12) | 713 (17) | 533 (12) | 720 (17) |
| Transient GEI | 1238 (29) | 693 (16) | 1031 (24) | 651 (15) | 819 (19) |
The numbers of genes (of 4269 analyzed) with genetic (G) only, environmental (E), additive genetic plus environmental, and GEI (including persistent and transient GEI) effects on expression variation are shown (FDR < 0.05). Results from the joint analysis are shown, as well as post hoc calls for each strain. Genes listed with environmental effects included those with additive and GEI effects.