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. 2010 Mar;135(3):261–274. doi: 10.1085/jgp.200910288

Table I.

Sequence alignmenta and effects of MTSET on channels with engineered cysteinesb

Channel Segment No. 1 11 21
KcsA M1 o 23 ALHWRAAGAA TVLLVIVLLA GSYLAVLAER
Kv1.2 S5 o 322 KASMRELGLL IFFLFIGVIL FSSAVYFAEA
Cav2.1 IS5 1o 220 MKAMIPLLQI GLLLFFAILI FAIIGLEFYM
IIS5 2o 608 LNSMKSIISL LFLLFLFIVV FALLGMQLFG
IIIS5 3o 1380 VNSLKNVFNI LIVYMLFMFI FAVVAVQLFK
IVS5 4o 1695 VQSFKALPYV CLLIAMLFFI YAIIGMQVFG
Pore-facing position * * * *
1 11 21 31
KcsA M2 i 86 LWGRLVAVVV MVAGITSFGL VTAALATWFV GREQ
Kv1.2 S6 i 385 IGGKIVGSLC AIAGVLTIAL PVPVIVSNFN YFYH
Cav2.1 IS6 1i 336 TWNWLYFIPL IIIGSFFMLN LVLGVLSGEF AKER
IIS6 2i 690 MVFSIYFIVL TLFGNYTLLN VFLAIAVDNL ANAQ
IIIS6 3i 1485 MEMSIFYVVY FVVFPFFFVN IFVALIIITF QEQG
IVS6 4i 1785 EFAYFYFVSF IFLCSFLMLN LFVAVIMDNF EYLT
Nav1.4 IVS6 4i 1565 SIGICFFCSY IIISFLIVVN MYIAIILENF NVAT
Pore-facing position * * ** ** **
Cytoplasm-facing position ** *** * *

Data for Nav1.4 are from (Sunami et al., 2004).

a

Shown alignments of S5 (Huber et al., 2000) and S6 (Zhorov et al., 2001) segments were used to build the Cav2.1 models.

b

Bold-oblique and underlined characters indicate positions where MTSET inhibits channels with engineered cysteines ≥30 and <30%, respectively (Zhen et al., 2005).