Table 3.
Sequence, copy number and nucleotide identity of the 13 novel RMs
| Element | Total copy number | ENV | Linker | 3'LTR | Consensus sequence†† | Nucleotide identity % | |
|---|---|---|---|---|---|---|---|
| bef. ENV | aft. ENV | ||||||
| Osr10† | 22 (+1) | Y | 12 | 0 | 10 | CGGTCTGACCG | 92.7 |
| Osr9 | 20 | Y | 7 | 0 | 13 | TTTTCGGACWTRTCCGAAAA | 88.1 |
| Sorghum | 9 | Y | 4 | 2 | 3 | AGGGCGGCAGTGCCGCCCT | 80.1 |
| Citrus | 12 | Y | 8 | 0 | 4 | AATCCGGCTWRCCGGATT | 66.5 |
| HOPIE† | 21 (+4) | Y | 7 | 0 | 14 | CGGACCGTCCG | 86.8 |
| Vitis | 12 | Y | 2 | 0 | 10 | CGGTCGACCG | 87.4 |
| Barbara | 26 | Y | 13 | 0 | 13 | TCGGTCYCACCGA | 85.2 |
| Inga | 32 | Y | 18 | 0 | 14 | AGCGGTASTACCGCT | 87.4 |
| Usier | 18 | Y | 6 | 0 | 12 | GTCGGACGTCCGAC | 76.1 |
| OPIE-2 | 9 | N | 0 | 9 | CACCGGACTGTCCGGTG | 100 | |
| PREM-2 | 8 | N | 0 | 8 | CACCGGACTGTCCGGTG | 95.5 | |
| Osr8 | 9 | N | 0 | 9 | CGGTCAGACCG | 85.4 | |
| Tnd-1 | 8 | N | 0 | 8 | ACAATCGATTGT | 100 | |
† The parenthesis includes the additional copies found at the beginning of the ENV-gene. †† The symmetrical subunits of each RM are underlined, revealing the length and composition of the intervening bases.