Table 3. Variants identified by two independent variant detection pipelines (454 and NG).

Regions shaded in grey and yellow are variant calls that were successfully validated (or were correct). The grey regions indicate known SNPs that were correctly identified and yellow regions indicate true novel variants. Unshaded regions indicate variant calls that were false positives (failed validation). In some cases, variant calls were made at positions that correspond to dbSNPs (dbSNP column). Asterisks indicate dbSNP data that failed to validate. Variants highlighted in red were found to code for non-synonymous changes at the protein level.

Position	EXONIC	W-39J	W-41J	W-73J	W-20J	W-40J	dbSNP iD	Coverage (number of reads)	Variation% (454/NG)	Team	Validated
75953844	-			CT			rs33389778	52 / 48	44% / 29%	454 / NG	Yes
75974741	-					GA|del	rs33400508	88	11%	454	No
75976331	-	AC						21 / 151	44% / 46%	454 / NG	Yes
75977692	-			AG			rs29824030	72 / 90	53% / 41%	454 / NG	Yes
75986373	-			AG			rs29511147	26 / 15	31% / 27%	454 / NG	Yes
76004142	-			CT			rs29576905	46 / 60	57% / 53%	454 / NG	Yes
76005510	+					CTCTG|del		89 / 155	37% / 39%	454 / NG	Yes
76005684	-			CG			rs33344729	54 / 65	41% / 40%	454 / NG	Yes
76008975	-			AT			rs37495474	73 / 74	55% / 48%	454 / NG	Yes
76018882	-			GT|del			rs52182172 rs52174161	53	11%	454	No
76037147	+				AG			60 / 72	51% / 45%	454 / NG	Yes
76037177	+			AC				45 / 47	56% / 44%	454 / NG	Yes
76037232	+	AG						33 / 138	44% / 35%	454 / NG	Yes
76048587	+		AG					68 / 108	51% / 44%	454 / NG	Yes
76070262	-			AG			rs37691247	71 / 96	49% / 35%	454 / NG	Yes