Table 4.
Polymorphic sites of COMT associated with DNDF identified by GLM, MLM, and Logistic Regression tests for DNDF
| Site | Snp/Indel | E/I | aa change | GLM | MLM | REG | Other trait* |
|---|---|---|---|---|---|---|---|
| 1233 | C-G | I | - | - | - | - | WSC |
| 1235 | A-T | I | - | - | - | - | WSC |
| 1236 | C-G | I | - | - | - | - | WSC |
| 1240 | C-T | I | - | - | - | - | WSC |
| 1243 | 10 | I | - | - | - | - | WSC |
| 1261 | A-G | I | - | - | - | - | WSC |
| 1296 | C-T | I | - | X | X | X | OMD |
| 1331 | C-T | I | - | X | X | X | OMD |
| 1377 | A-T | I | - | X | X | X | OMD |
| 1381 | 7 | I | - | X | X | X | OMD |
| 1439 | A-C | I | - | X | - | X | - |
| 1449 | 4-8 | I | - | X | X | - | - |
| 1547 | 6 | I | - | X | X | X | OMD |
| 1589 | A-G | I | - | X | X | X | OMD |
| 1638 | 1 | I | - | X | - | X | OMD |
| 1811 | 6 | I | - | X | X | X | OMD |
| 1902 | 1 | I | - | - | - | X | - |
| 1907 | 3 | I | - | - | - | X | - |
| 1916 | A-G | I | - | - | - | X | - |
| 1917 | A-C | I | - | X | X | X | - |
| 1918 | A-G | I | - | X | X | X | - |
| 1919 | C-T | I | - | - | - | X | - |
| 1920 | 28 | I | - | X | X | X | OMD |
| 1948 | C-T | I | - | - | - | X | - |
| 1952 | C-T | I | - | - | - | X | - |
| 1953 | A-T | I | - | - | - | X | - |
| 1954 | 77 | I | - | X | X | X | OMD |
| 2032 | A-C | I | -- | - | - | X | - |
| 2103 | C-T | E2 | Ser - Pro | - | - | X | OMD |
| 2178 | C-G | E2 | His - Asp. | X | X | X | OMD |
| 2185 | C-G | E2 | Arg - Pro | X | X | X | - |
| 2693 | A-C | E2 | Syn. | - | - | - | NDF |
*All polymorphic sites associated with WSC, OMD and NDF were identified only by Logistic Regression. E: exon; I: intron; aa: Amino Acid; Syn.: Synonymous substitution
Site numbers denote bp alignment positions of individual SNPs and starting position of Indels based on reference sequence AY323283 of Genbank.