Table 5.

Significantly associated polymorphic sites of CCoAOMT1 and CCoAOMT2 genes identified by GLM, MLM and Logistic Regression (REG) with NDF, OMD, and WSC, respectively

Gene	Trait	Site	Snp/Indel	E/I	aa change	GLM	MLM	REG
CCoAOMT1	NDF	726	C-T	I3	-	X	-	-
	NDF	944	C-T	I4	-	X	-	-
	OMD	944	C-T	I4	-	X	-	-
	WSC	1299	C-G	E5	Ala - Gly	-	-	X
CCoAOMT2	WSC	404	1	I2	-	-	-	X
	WSC	414	4	I2	-	X	-	X

E: exon; I: intron; aa: Amino Acid.

Site numbers denote bp alignment positions of individual SNPs and starting position of Indels. (Based on reference sequences AY323264 and AY279022, for CCoAOMT1 and CCoAOMT2, respectively).