Table 4.
Pham assignments of virion structure and assembly genes in mycobacteriophage clusters.
| Cluster | Small Ter | Large Ter | Portal | Protease | Scaffold | Capsid | MTS | ‘G’ | ‘T’ | Tmp |
|---|---|---|---|---|---|---|---|---|---|---|
| Cluster A | Pham2 | Pham3 | Pham1433 | Pham5 | Pham1406-1 | Pham1406-2 | Pham12-1 | Pham12-2 | Pham13 | |
| Cluster B | Pham931 | Pham394 | Pham347 | ? | Pham1406-18 | Pham1406-19 | ?? | ?? | Pham13 | |
| Cluster C1 | Pham13 | |||||||||
| C2 | Pham511 | Pham13 | ||||||||
| Cluster D | Pham891 | Pham901 | Pham857 | Pham862? | Pham86-1 | Pham1439 | Pham1440 | Pham13 | ||
| Cluster E | Pham209 | Pham2 | Pham147 | ? | Pham164 | Pham86-2 | Pham2330-1 | Pham2330-2 | Pham13 | |
| Cluster F1 - B&R* | Pham512 | Pham2 | Pham3 | Pham1433 | Pham1517 | Pham1406-1 | Pham86-2 | Pham2330-1 | Pham2330-3 | Pham13 |
| - Others^ | Pham74 | Pham2 | Pham3 | Pham100 | Pham1517 | Pham118 | Pham86-2 | Pham2330-1 | Pham2330-3 | Pham13 |
| Cluster F2 | Pham512 | Pham2 | Pham3 | Pham1433 | Pham1517 | Pham1406-1 | Pham509 | Pham510 | Pham511 | Pham13 |
| Cluster G | Pham456 | Pham2 | Pham3 | Pham1433 | Pham1517 | Pham1406-1 | Pham509 | Pham1429-1 | Pham1429-2 | Pham13 |
| Cluster H | Pham891 | Pham901 | Pham857 | Pham862? | Pham86-1 | Pham1439 | Pham1440 | Pham13 | ||
| Cluster I - Che9c | Pham294 | Pham2 | Pham147 | Pham315 | Pham322 | Pham86-2 | Pham2330-1 | Pham2330-5 | Pham13 | |
| Cluster I - Brujita | Pham74 | Pham2 | Pham147 | Pham315 | Pham322 | Pham86-2 | Pham2330-1 | Pham2330-4 | Pham13 | |
| Corndog | Pham456 | Pham2 | Pham457 | Pham459 | Pham462 | Pham86-2 | Pham2330-1 | Pham2330-3 | Pham13 | |
| Giles | Pham2 | Pham1311 | Pham150 | Pham1326 | ?? | Pham12-2 | Pham13 | |||
| TM4 | Pham456 | Pham2 | Pham3 | Pham1433 | Pham1517 | Pham1406-1 | Pham509 | Pham1429-1 | Pham1429-2 | Pham13 |
| Omega | Pham2 | Pham457 | Pham315 | Pham748 | Pham86-2 | Pham2330-1 | Pham2330-3 | Pham13 | ||
| Wildcat | Pham2 | Pham3 | Pham1216 | Pham1517 | Pham1219-1 | Pham1219-2 | Pham1224? | Pham1225? | Pham13 |
*
Mycobacteriophages Boomer and Ramsey
^
Cluster F1 phages other than Boomer and Ramsey
Ter: Terminase; MTS: Major Tail Subunit; Tmp: Tapemeasure protein; ‘G’ and ‘T’ refer to putative analogues of phage
lambda gpG and gpT that are expressed via a programmed translational frameshift.