Skip to main content
. Author manuscript; available in PMC: 2010 Mar 5.
Published in final edited form as: Nat Protoc. 2008;3(8):1287–1298. doi: 10.1038/nprot.2008.119

Table 6.

LC/MS-MS parameters for the API 3000 triple quadrupole mass spectrometer

Mass Spectrometer Parameters dX dI dU 8-oxo-dG
14N Q1→Q3 m/z1 269→153 253→137 229→113 284→168
15N Q1→Q3 m/z 273→157 257→141 231→115 289→173
Nebulizer gas (psi)) 8 8 8 8
Curtain gas (L/min) 8 8 8 8
Collision gas (L/min) 6 4 4 8
Ion Spray Voltage (V) 4000 4500 4500 4000
Temperature (°C) 400 350 350 400
Turbo ion spray gas (psi) 800 800 400 800
Declustering potential (V) 20 20 20 20
Focusing potential (V) 100 100 100 100
Entrance potential (V) 5 5 5 5
Collision Energy (V) 10 10 10 20
Collision cell exit potential (V) 10 10 10 10
HPLC Parameters2 dX dI dU 8-oxo-dG

%Solvent B 1.3 0.7 1 1.5
Retention time (min)3 8-10 10-12 3-5 11-13
1

m/z values monitored in MRM mode for the transition of the parent ion to the fragment ion; 14N refers to the analyte under study; 15N refers to the isotopically labeled internal standard.

2

Thermo Hypersil Gold C18 column used in step 39

3

Retention time is expected to range over the values indicated