Table 2.

Comparison of accuracy of SNVMix1, SNVMix2 and SNVMix combined with base and mapping quality thresholding

Model	Run	Train AUC	TP	FP	TN	FN	Sens	Prec	F-measure
SNVMix1	10×	0.9880	305	192	0	0	1.0000	0.6137	0.7606
	40×	0.9924	293	107	85	12	0.9607	0.7325	0.8312
SNVMix2	10×	0.9905	299	162	30	6	0.9803	0.6486	0.7807
	40×	0.9929	290	107	85	15	0.9508	0.7305	0.8262
SNVMix2+thresholding	mQ50_bQ20 (10×)	0.9882	287	88	104	18	0.9410	0.7653	0.8441
	mQ50_bQ15 (40×)	0.9928	287	71	121	18	0.9410	0.8017	0.8658