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. 2010 Feb 4;11:75. doi: 10.1186/1471-2105-11-75

Figure 1.

Figure 1

Loop-word extraction from chain B of protein 1GPW. a) 3D structure of the protein, b) the 27 structural letters of HMM-SA, c) structure simplification as a succession of structural letters, d) extraction of simplified loops, e) extraction of overlapping words of four structural-letters with structural words FFFF and GDZI illustrated.