Table 1.
Genes encoded on the mycobacteriophage BPs genome
| Gene | F/R | Start | Stop | Product size (kDa) | Comments | Closest match | Other significant matches |
|---|---|---|---|---|---|---|---|
| 1 | F | 43 | 387 | 12.2 | Halo gp1 | TM4 gp3 | |
| 2 | F | 455 | 1891 | 52.2 | Terminase | Halo gp2 | TM4 gp4 |
| 3 | F | 1888 | 3402 | 55.3 | Portal | Halo gp3 | Che9d gp4 |
| 4 | F | 3403 | 6192 | 101.8 | Halo gp4 | TM4 gp6 | |
| 5 | F | 6189 | 6395 | 7.5 | Halo gp5 | TM4 gp7 | |
| 6 | F | 6514 | 7056 | 19.4 | Scaffold | Halo gp6 | Che9d gp6 |
| 7 | F | 7103 | 8038 | 33.5 | Capsid | Halo gp7 | Che9d gp7, PA6 gp6 |
| 8 | F | 8075 | 8302 | 7.5 | Halo gp8 | ||
| 9 | F | 8314 | 8811 | 17.7 | Halo gp9 | PA6 gp7, Che9d gp9 | |
| 10 | F | 8811 | 9167 | 13.4 | Halo gp10 | TM4 gp11 | |
| 11 | F | 9154 | 9417 | 9.3 | Halo gp11 | TM4 gp12 | |
| 12 | F | 9414 | 9857 | 15.9 | Halo gp12 | TM4 gp13 | |
| 13 | F | 9854 | 10468 | 21.8 | Major tail subunit | Halo gp13 | TM4 gp14 |
| 15 | F | 10569 | 11464 | 33.4 | Halo gp14 | TM4 gp15 | |
| 14 | F | 10569 | 11078 | 18.7 | Halo gp15 | TM4 gp14 | |
| 16 | F | 11464 | 15477 | 137.7 | Tapemeasure protein | Halo gp16 | TM4 gp17, Che9d gp17 |
| 17 | F | 15477 | 16649 | 44.7 | Minor tail protein | Halo gp17 | TM4 gp18, Giles gp21 |
| 18 | F | 16649 | 18403 | 65.3 | Minor tail protein | Halo gp18 | TM4 gp19. Giles gp22 |
| 19 | F | 18403 | 18864 | 17.4 | Halo gp19 | TM4 gp20 | |
| 20 | F | 18861 | 19997 | 40.4 | Halo gp20 | TM4 gp21, Giles gp24 | |
| 21 | F | 20008 | 20442 | 16.5 | Halo gp21 | TM4 gp22 | |
| 22 | F | 20442 | 22835 | 82.1 | Minor tail protein | Halo gp22 | L5 gp32 |
| 23 | F | 22850 | 23170 | 12.0 | Halo gp23 | ||
| 24 | F | 23173 | 23355 | 6.5 | Halo gp24 | ||
| 25 | F | 23355 | 23630 | 9.4 | Halo gp25 | ||
| 26 | F | 23630 | 23824 | 7.1 | Halo gp26 | ||
| 27 | F | 23885 | 25201 | 47.4 | Lysin A | Halo gp27 | R. erythropolis peptidase |
| 28 | F | 25201 | 26409 | 42.9 | Lysin B | Halo gp28 | Giles gp32 |
| 29 | F | 26435 | 26785 | 11.8 | Halo gp29 | ||
| 30 | F | 26790 | 27110 | 11.3 | Halo gp30 | Giles gp34 | |
| 31 | F | 27107 | 27724 | 23.1 | Halo gp31 | Giles gp35 | |
| 32 | R | 27721 | 28917 | 42.5 | Integrase | Halo gp32 | Nocardia phage integrase |
| 33 | R | 28914 | 29324 | 14.7 | Repressor | Halo gp33 | Nocardia DNA-binding protein |
| 34 | F | 29498 | 29755 | 9.2 | Xis? | Halo gp34 | |
| 35 | F | 29752 | 30150 | 13.8 | Halo gp35 | ||
| 36 | F | 30150 | 30749 | 22.2 | Halo gp36 | PG1 gp57 etc. | |
| 37 | F | 30749 | 30931 | 7.0 | Halo gp37 | ||
| 38 | F | 30928 | 31278 | 13.9 | Halo gp38 | P2 gp91 | |
| 39 | F | 31275 | 31424 | 4.7 | Halo gp39 | ||
| 40 | F | 31424 | 31774 | 12.7 | Halo gp40 | ||
| 41 | F | 31758 | 31910 | 5.5 | Halo gp41 | ||
| 42 | F | 31907 | 32992 | 40.2 | RecE | Halo gp42 | Che9c gp60 |
| 43 | F | 33010 | 34398 | 49.3 | RecT | Halo gp43 | Giles gp53 |
| 44 | F | 34401 | 34949 | 19.8 | Halo gp44 | ||
| 45 | F | 34946 | 35164 | 7.9 | Halo gp45 | ||
| 46 | F | 35128 | 35520 | 14.6 | Halo gp46 | ||
| 47 | F | 35517 | 35906 | 14.3 | Halo gp47 | ||
| 48 | F | 35894 | 36139 | 9.1 | Halo gp48 | ||
| 49 | F | 36136 | 36480 | 12.7 | Halo gp49 | ||
| 50 | F | 36477 | 36917 | 16.0 | Halo gp50 | ||
| 51 | F | 36914 | 37504 | 21.5 | RuvC | Halo gp51 | Giles gp67 |
| 52 | F | 37506 | 38051 | 20.6 | Halo gp53 | ||
| 53 | F | 38048 | 38206 | 5.9 | Halo gp54 | ||
| 54 | F | 38203 | 38631 | 16.2 | Halo gp55/gp57 | ||
| 55 | F | 38688 | 38972 | 10.0 | Halo gp58 | ||
| 56 | F | 38975 | 39766 | 27.4 | Halo gp59 | Qyrzula gp8, Rosebush gp8, etc. | |
| 57 | F | 39766 | 39891 | 4.7 | Halo gp60 | ||
| 58 | F | 39937 | 40308 | 14.2 | Che8 gp89 | Halo gp56; PMC gp80 | |
| 59 | F | 40295 | 40393 | 3.6 | Halo gp60 | ||
| 60 | F | 40437 | 40760 | 10.9 | Halo gp61 | ||
| 61 | F | 40859 | 41101 | 8.3 | Halo gp62 | ||
| 62 | F | 41125 | 41451 | 12.2 | Halo gp63 | TM4 gp89; LambdaSa03 HNH | |
| 63 | F | 41545 | 41766 | 7.9 | Halo gp64 | PG1 gp69, etc. |