Table 2.
Sequence information, including the degree of the external loop, for 20 of the 77 pseudoknot-free 23S ribosomal RNA secondary structures from the CRW [2]. The 20 selected were also used in the analyses of [8], and are representative of the whole set. The different types of sequences are (a) Archae, (b) Eubacteria, (c) Choloroplast, (m) Mitochondria, and (e) Eucarya.
| Index | Type | Organism Name | GenBank Accession # | Length | Degree |
|---|---|---|---|---|---|
| 1 | a | Haloarcula marismortui | X13738 | 2925 | 1 |
| 2 | a | Thermococcus celer | M67497 | 3029 | 1 |
| 3 | b | Thermotoga maritima | M67498 | 3023 | 1 |
| 4 | b | Thermus thermophilus | X12612 | 2915 | 1 |
| 5 | b | Borrelia burgdorferi | M88330 | 2926 | 1 |
| 6 | b | Escherichia coli | J01695 | 2904 | 1 |
| 7 | b | Pseudomonas aeruginosa | Y00432 | 2893 | 1 |
| 8 | b | Bacillus subtilis |
K00637 AF008220 Z99119 |
2927 | 1 |
| 9 | b | Mycobacterium leprae | X56657 | 3122 | 1 |
| 10 | c | Chlamydomonas reinhardtii | X15727 | 2902 | 1 |
| 11 | c | Zea mays | Z00028 | 2985 | 1 |
| 12 | m | Chlamydomonas eugametos | AF008237 | 1915 | 13 |
| 13 | m | Saccharomyces cerevisiae | J01527 | 3273 | 1 |
| 14 | m | Zea mays | K01868 | 3514 | 6 |
| 15 | m | Caenorhabditis elegans | X54252 | 953 | 8 |
| 16 | m | Drosophila melanogaster | X53506 | 1335 | 9 |
| 17 | m | Xenopus laevis | M10217 | 1640 | 12 |
| 18 | e | Giardia intestinalis | X52949 | 2850 | 10 |
| 19 | e | Saccharomyces cerevisiae | U53879 | 3554 | 7 |
| 20 | e | Arabidopsis thaliana | X52320 | 3539 | 12 |