Table 1.
Markers representing cases when the willow sequence shows best sequence homology to the poplar paralog (paralog 2) or to some other genomic region in poplar other than the expected (paralog 1).
| Marker | Poplar paralog 1* | Poplar paralog 2** | Willow *** | Willow LG |
|---|---|---|---|---|
| XI_19_sa | XI:13708412- 13713847 | I:34332298- 34337706 | I:34336820- 34337014 | Ib |
| VI_21_sa | VI:1059584- 1063805 | XVI:175981- 180636 | XVI:179650- 180165 | Ib |
| XI_14om_sa | XI:13390381- 13396292 | XIII:8162057- 8167721 | XIII:8162846- 8163488 | Ib |
| XVII_8om_sa | XVII:2862545- 2865794 | I:21917969- 21921284 | I:21918035- 21918509 | Ib |
| V-3 | V | NA | II: II:7149915- 7150175 | II |
| XIV_2om_sa_pI+pIII | XIV:1405173- 1410344 | II:11032656- 11037852 | II:11034560- 11035232 | II |
| I-3_sa | I:2799329- 2802489 | III:16679089- 16681782 | III:16679770- 16679455 | III |
| II_27_sa | II:659865- 663083 | V:17347198- 17350454 | V:17347673- 17348033 | V |
| X_23_sa_pI | X:2909535- 2910774 | VIII:13507022- 13508215 | VIII:13507309- 13508014 | VIII |
| X_5_sa_pI+pIII | X:4387251- 4392821 | scaff.132:44316- 50181 | scaff.132:46692- 47354 | VIII |
| I_55_sa | I:19888722- 19894389 | IX:6182711- 6188752 | IX:6188219- 6188751 | IX |
| I_56_sa | I:20786788- 20790053 | IX:5366669- 5370261 | IX:5368352- 5368805 | IX |
| R_79_sa | VIII:2675046- 2678768 | X:18365204- 18369371 | X:18368575- 18368938 | X |
| I-64_sa | I:28954163- 28960895 | XI:5889680- 5902742 | XI:5899792- 5899792 | XI |
| XV_14_sa | XV:4861609- 4865109 | XII:9029417- 9031788 | XII:9030854- 9031468 | XII |
| XV_3om_sa | XV:2214022- 2229691 | XII:5650497- 5668349 | XII:5659107- 5659662 | XII |
| XIX_16_sa | XIX:10024624- 10029438 | scaff.142:594094- 598587 | scaff.142:595203- 595639 | XIII |
| II-22_sa | II:20278259- 20280545 | XIV:7371540- 7374037 | XIV:7372638- 7372921 | XIV |
| II-15_sa | II:13716352- 13719221 | XIV:3952304- 3955719 | XIV:3952744- 3952880 | XIV |
| R-76_sa | XIII:13007808- 13016472 | XIX:10828344- 10837472 | XIX:10828231- 10828870 | XIX |
| Cases when the willow fragment shows best sequence homology to a different region than paralog 1 and 2 in poplar | ||||
| I-44_sa | I:8108096- 8110817 | III:11697654- 11701038 | I:28482702- 28483096 | Ib |
| VI_20_sa | VI:175694- 177367 | I:24601135- 24605961 | scaff.137:193270- 193790 | Ib |
| XVI-4_sa | XVI:3509806- 3516550 | VI:3514697- 3520404 | XVI:3668954- 3669420 | Ib |
| VI-22_sa | VI:9566935- 9572156 | scaff.215:114354- 120054 | IV:16209337- 16209466 | B |
* Genomic region in poplar where primers were designed
** The second best BLAST hit with paralog 1
*** Best BLAST hit with the willow sequence
NA = no alignment available since the markers were developed by Hanley et al. (2006)