Fig. 1.
Equilibrium thermal denaturation of A21 and Fs peptides in explicit solvent by using the parm94 and parm-mod force fields. (Upper) The mean number of hydrogen bonds computed as the average number of w residues by using the classification described in Methods. (Lower) The average number of helices computed as the average number of unbroken stretches of w residues. Error bars are 65% confidence limits estimated by block averages. The Fs peptide is clearly more helical than A21 under both force fields.