Table 2. Hydrogen bonds in HBH-19 at R1 = 0.102.
Type | Donor | Acceptor | D—A, Å | H—A, Å | Angle C=O···N(or O),° |
---|---|---|---|---|---|
Head-to-tail | N1 | 018* | 2.947 | 2.12 | 155 |
Peptide—water | N2 | W1 | 2.914 | 2.03 | |
4→1 | N3 | 00 | 3.029 | 2.24 | 132 |
4→1 | N4 | 01 | 3.000 | 2.54† | 119 |
5→1 | N5 | 01 | 2.943 | 2.03 | 170 |
5→1 | N6 | 02 | 2.958 | 2.09 | 148 |
5→1 | N7 | 03 | 3.020 | 2.13 | 155 |
5→1 | N8 | 04 | 3.022 | 2.14 | 158 |
5→1 | N9 | 05 | 2.865 | 1.98 | 159 |
5→1 | N10 | 06 | 2.967 | 2.11 | 155 |
5→1 | N11 | 07 | 3.093 | 2.22 | 163 |
5→1 | N12 | 08 | 2.975 | 2.10 | 161 |
5→1 | N13 | 09 | 3.007 | 2.12 | 157 |
5→1 | N14 | 010 | 2.986 | 2.09 | 153 |
5→1 | N15 | 011 | 2.895 | 2.05 | 151 |
5→1 | N16 | 012 | 2.909 | 2.03 | 156 |
5→1 | N17 | 013 | 3.022 | 2.15 | 160 |
5→1 | N18 | 014 | 2.998 | 2.22 | 161 |
4→1 | N19 | 016 | 3.287‡ | 2.66‡ | 108 |
Water—peptide | W1 | 018* | 2.914 | ||
W1 | W2§ | 3.097 | |||
W2 | 017 | 2.780 | |||
W2 | 017¶ | 2.590 | |||
W3 | O0 | 2.856 | |||
W3 | O15∥ | 2.940 | |||
N4 | W3 | 3.084 | 2.44† |
Symmetry equivalent x, y, -1 + z
The donor N4H appears to make a bifurcated hydrogen bond to W3 and O1 with long H to acceptor distances. O1 is also an acceptor for N5H, where normal D—A and H—A distances prevail.
The final hydrogen bond in the helix, N19H···O16, has long distances for D—A and H—A. There are no other possibilities for hydrogen bonds with N19H.
Symmetry equivalent 1-x, y, 1 -z.
Symmetry equivalent 1-x, y, 2-z.
Symmetry equivalent 0.5-x, 0.5 + y, 1 -z.