Table 5. Statistics of RDC calculations of DnaK-TTh-NDB.
Calculations for the subdomains of DnaK-TTh-NDB in various states, using a grid-search algorithm.
Na | αb | βb | γb | RMSD | Qc | Szz | Syy | Sxx | ||
---|---|---|---|---|---|---|---|---|---|---|
Deg. | Deg. | Deg. | Å | |||||||
DnaKTTh-NBD AMPPNP IA | Alld | 45 | 161.83 | 87.59 | 63.07 | 8.11 | 0.65 | −8.61 E−04 | 8.83E−04 | −2.14E−05 |
<SV>e | 34 | 160.23 | 87.41 | 61.89 | 9.10 | 0.68 | −9.21 E−04 | 8.64E−04 | 5.68E−05 | |
σf | 4 | 6.18 | 4.48 | 5.20 | 1.63 | 0.10 | 6.31 E−05 | 1.02E−04 | 7.41 E−05 | |
DnaKTTh-NBD AMPPNP IB | All | 26 | 136.39 | 76.41 | 69.98 | 10.52 | 0.67 | −1.07E−03 | 7.54E−04 | 3.13E−04 |
<SV> | 23 | 145.34 | 81.41 | 66.17 | 11.06 | 0.74 | −8.97E−04 | 7.38E−04 | 1.59E−04 | |
σ | 3 | 26.26 | 5.27 | 4.51 | 0.91 | 0.06 | 6.43E−05 | 9.32E−05 | 8.65E−05 | |
DnaKTTh-NBD AMPPNP IIA | All | 34 | 163.02 | 90.63 | 61.09 | 90.63 | 118.91 | 7.30E+01 | 1.51E+02 | 1.63E+02 |
<SV> | 27 | 144.59 | 88.00 | 58.68 | 6.97 | 0.53 | −9.27E−04 | 7.37E−04 | 1.90E−04 | |
σ | 4 | 6.89 | 5.91 | 4.57 | 0.62 | 0.06 | 5.13E−05 | 6.43E−05 | 8.87E−05 | |
DnaKTTh-NBD AMPPNP IIB | All | 34 | 159.84 | 90.29 | 56.92 | 90.29 | 123.08 | 6.98E+01 | 1.47E+02 | 1.60E+02 |
<SV> | 28 | 166.71 | 92.91 | 69.78 | 9.05 | 0.71 | −8.08E−04 | 8.07E−04 | 1.04E−06 | |
σ | 4 | 6.99 | 3.68 | 9.96 | 1.20 | 0.10 | 6.12E−05 | 6.56E−05 | 3.15E−05 | |
DnaKTTh-NBD ADP IA | All | 45 | 157.95 | 84.39 | 67.53 | 7.94 | 0.60 | −1.02E−03 | 7.65E−04 | 2.58E−04 |
<SV> | 40 | 163.96 | 85.36 | 67.06 | 7.92 | 0.64 | −8.42E−04 | 6.50E−04 | 1.92E−04 | |
σ | 5 | 13.94 | 6.62 | 5.75 | 0.87 | 0.06 | 6.12E−05 | 7.26E−05 | 7.98E−05 | |
DnaKTTh-NBD ADP IB | All | 26 | 117.43 | 81.50 | 68.30 | 8.46 | 0.57 | −1.03E−03 | 7.68E−04 | 2.65E−04 |
<SV> | 22 | 154.49 | 87.39 | 69.54 | 9.34 | 0.65 | −9.72E−04 | 6.76E−04 | 2.97E−04 | |
σ | 3 | 60.48 | 5.19 | 4.05 | 1.10 | 0.09 | 6.48E−05 | 7.00E−05 | 5.49E−05 | |
DnaKTTh-NBD ADP IIA | All | 24 | 183.93 | 75.88 | 62.49 | 5.77 | 0.43 | −9.78E−04 | 6.48E−04 | 3.30E−04 |
<SV> | 27 | 180.00 | 81.18 | 68.08 | 6.97 | 0.48 | −9.94E−04 | 7.64E−04 | 2.30E−04 | |
σ | 4 | 11.63 | 3.39 | 5.92 | 0.78 | 0.06 | 4.18E−05 | 7.17E−05 | 6.13E−05 | |
DnaKTTh-NBD ADP IIB | All | 34 | 165.13 | 89.56 | 49.80 | 8.04 | 0.53 | −1.06E−03 | 9.86E−04 | 7.54E−05 |
<SV> | 30 | 156.91 | 83.62 | 48.41 | 8.11 | 0.61 | −8.48E−04 | 7.54E−04 | 9.37E−05 | |
σ | 4 | 10.35 | 3.54 | 4.09 | 1.13 | 0.07 | 5.72E−05 | 7.79E−05 | 4.49E−05 | |
DnaKTTh-NBD APO IA | All | 66 | 160.58 | 81.15 | 65.76 | 4.53 | 0.46 | −7.96E−04 | 6.45E−04 | 1.51 E−04 |
<SV> | 41 | 160.52 | 81.02 | 66.12 | 4.31 | 0.44 | −8.06E−04 | 6.44E−04 | 1.62E−04 | |
σ | 5 | 5.09 | 1.85 | 3.15 | 0.36 | 0.05 | 5.22E−05 | 7.22E−05 | 4.42E−05 | |
DnaKTTh-NBD APO IB | All | 32 | 189.53 | 76.49 | 66.36 | 8.46 | 0.66 | −1.10E−03 | 6.17E−04 | 4.81E−04 |
<SV> | 19 | 90.00 | 76.14 | 66.61 | 7.90 | 0.61 | −1.12E−03 | 6.85E−04 | 4.39E−04 | |
σ | 3 | 69.98 | 4.31 | 3.00 | 1.04 | 0.08 | 9.78E−05 | 7.13E−05 | 1.01E−04 | |
DnaKTTh-NBD APO IIA | All | 25 | 136.16 | 83.95 | 67.26 | 5.38 | 0.79 | −5.17E−04 | 3.60E−04 | 1.57E−04 |
<SV> | 15 | 129.44 | 84.03 | 69.49 | 4.99 | 0.72 | −5.49E−04 | 4.03E−04 | 1.46E−04 | |
σ | 3 | 36.32 | 22.91 | 20.36 | 0.61 | 0.08 | 9.11E−05 | 7.78E−05 | 4.76E−05 | |
DnaKTTh-NBD APO IIB | All | 30 | 144.58 | 89.91 | 51.28 | 5.42 | 0.51 | −8.83E−04 | 6.93E−04 | 1.90E−04 |
<SV> | 19 | 143.31 | 89.38 | 51.58 | 4.91 | 0.47 | −8.89E−04 | 7.34E−04 | 1.56E−04 | |
σ | 3 | 8.92 | 3.18 | 4.37 | 0.60 | 0.07 | 7.23E−05 | 9.21 E−05 | 7.24E−05 | |
DnaKTTh NBD_SBD ADP IA | All | 25 | 97.01 | 60.93 | 75.94 | 7.42 | 0.46 | −1.54E−03 | 9.82E−04 | 5.54E−04 |
<SV> | 16 | 96.21 | 60.03 | 75.90 | 6.80 | 0.44 | −1.56E−03 | 1.03E−03 | 5.25E−04 | |
σ | 2 | 15.98 | 4.21 | 5.44 | 1.00 | 0.08 | 1.20E−04 | 1.45E−04 | 8.41E−05 | |
DnaKTTh NBD SBD ADP IB | All | 24 | 135.87 | 68.47 | 74.47 | 7.54 | 0.48 | −1.89E−03 | 1.25E−03 | 6.37E−04 |
<SV> | 15 | 124.35 | 68.97 | 72.87 | 7.00 | 0.46 | −1.82E−03 | 1.21E−03 | 6.16E−04 | |
σ | 2 | 43.09 | 2.72 | 5.04 | 1.04 | 0.09 | 1.32E−04 | 1.90E−04 | 1.28E−04 | |
DnaKTTh NBD SBD ADP IIA | All | 31 | 97.27 | 74.12 | 75.60 | 7.08 | 0.38 | −1.54E−03 | 1.04E−03 | 5.04E−04 |
<SV> | 20 | 96.51 | 75.09 | 73.69 | 6.54 | 0.37 | −1.52E−03 | 1.04E−03 | 4.79E−04 | |
σ | 3 | 15.78 | 2.54 | 2.97 | 1.31 | 0.08 | 1.02E−04 | 1.16E−04 | 1.04E−04 | |
DnaKTTh NBD SBD ADP IIB | All | 27 | 94.99 | 78.53 | 66.32 | 7.15 | 0.38 | −1.83E−03 | 1.37E−03 | 4.59E−04 |
<SV> | 16 | 92.49 | 79.57 | 65.57 | 6.67 | 0.35 | −1.87E−03 | 1.38E−03 | 4.91E−04 | |
σ | 2 | 9.36 | 3.74 | 2.25 | 0.96 | 0.05 | 8.54E−05 | 9.74E−05 | 1.21E−04 |
Number of RDCs used
Euler angles in the z-y-z convention
All RDCs used, best fit result
Average of self validation at the 60% level
Standard deviation of the self validation