Table 1.
No. | miRNA | Probe sequence (5'-3') | HD | BW | ASG | PSG | MG | FB | OV | TE | HC | MT | Nor |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | miR-124 | TAAGGCACGCGGTGAATGCCAAG | + | + | + | ||||||||
2 | miR-1497 | GCCCACCACCTGCTGCATGTA | + | + | |||||||||
3 | miR-286 | AGCACGAGTGTTCGGTCTAGTCA | + | + | NA | ||||||||
4 | miR-263b | CTTGGCACTGGGAGAATTCAC | + | + | |||||||||
5 | anti-miR-276-5p | AGCGAGGTATAGAGTTCCTACGT | + | + | NA | ||||||||
6 | miR-5 | CATATCACAACGATCGTTCCTTT | + | + | NA | ||||||||
7 | miR-282 | ACAGACAAAGCCTAGTAGAGGCTAGATT | + | + | NA | ||||||||
8 | miR-29b | GCACTGAATTCGAATGGTGCTA | + | + | + | + | |||||||
9 | miR-283 | CCCAGAATTACCAGCTGATATTTA | + | + | + | + | |||||||
10 | miR-7 | ACAACAAAATCACTAGTCTTCCA | + | + | + | + | + | ||||||
11 | miR-9a | TCATACAGCTAGATAACCAAAGA | + | + | + | + | |||||||
12 | miR-228 | CCGTGAATTCTTCCAGTGCCATT | + | + | + | + | + | + | + | + | |||
13 | miR-92 | GGACTCCCTACTAGAGTCAATTT | + | + | + | + | |||||||
14 | miR-288 | CATGAAATGAAATCGACATGAAA | + | + | + | + | |||||||
15 | miR-274 | ATTACCCGTTAGTGTCGGTCACAAAA | + | + | + | + | |||||||
16 | miR-278 | AAACGGACGAAAGTCCCACCGA | + | + | + | NA | |||||||
17 | miR-13a | CCACATCAAAGTGGCTGTGATA | + | + | + | + | |||||||
18 | miR-275 | CGCGCGCTACTTCAGGTACCTGA | + | + | + | + | + | + | |||||
19 | miR-10b-3p | ACCTCTCTAGAACCGAATTTGT | + | + | + | + | + | ||||||
20 | miR-10b-5p | ACAAATTCGGATCTACAGGGT | + | + | + | + | + | ||||||
21 | miR-133 | CTACAGCTGGTTGAAGGGGACCAAATG | + | + | + | + | + | ||||||
22 | miR-1 | CTCCATACTTCTTTACATTCCA | + | + | + | + | + | + | |||||
23 | miR-277 | TGTCGTACCAGATAGTGCATTTA | + | + | + | + | + | NA | |||||
24 | miR-iab-4-5p | TCAGGATACATTCAGTATACGT | + | + | + | + | + | + | + | ||||
25 | miR-279 | TCAATGAGTGTAGATCTAGTCA | + | + | + | + | + | + | + | + | |||
26 | miR-281-3p | ATAAAGAGAGCAACTCCATGACA | + | + | + | + | + | + | + | ||||
27 | miR-281-5p | ACTGTCGACGGATAGCTCTCTT | + | + | + | + | + | + | |||||
28 | miR-252 | CCTGCGGCACTAGTACTTAGGAA | + | + | + | + | + | + | + | ||||
29 | miR-307-3p | TCACAACCTCCTTGAGTGAG | |||||||||||
30 | miR-307-5p | ACATCACACCCAGGTTGAGTGAGT | + | + | + | + | + | + | NA | ||||
31 | miR-12 | ACCAGTACCTGATGTAATACTCA | + | + | + | + | + | + | NA | ||||
32 | miR-184-3p | GCCCTTATCAGTTCTCCGTCCA | + | + | + | + | + | + | + | + | + | ||
33 | miR-31a | ACAGCTATGCCGACTTCTTGCCT | + | + | + | + | + | + | + | + | + | + | |
34 | miR-305 | CAGAGCACCTGATGAAGTACAAT | + | + | + | + | + | + | + | + | + | + | |
35 | miR-276-3p | AGAGCACGGTATGAAGTTCCTA | + | + | + | + | + | + | + | + | + | + | |
36 | miR-276-5p | AGCGAGGTATAGAGTTCCTACGT | + | NA | |||||||||
37 | miR-289 | AGTCGCAGGCTCCACTTAAATATTTA | + | + | + | + | + | + | + | + | + | + | + |
38 | let-7a | TACTATACAACCTACTACCTCA | + | + | + | + | + | + | + | + | + | + | + |
39 | miR-100 | CACAAGTTCGGATTTACGGGTT | + | + | + | + | + | + | + | + | + | + | + |
40 | miR-8 | GACATCTTTACCTGACAGTATTA | + | + | + | + | + | + | + | + | + | + | + |
41 | bantam | AATTAGCTTTCACAATGATCTCA | + | + | + | + | + | + | + | + | + | + | + |
42 | miR-200b | CATCTTTACCTGACAGTATTAGA | + | + | + | + | + | + | + | + | + | + | + |
43 | miR-2a | GCTCATCAAAGCTGGCTGTGATA | + | + | + | + | + | + | + | + | + | + | + |
44 | miR-317 | ACTGAGATACCACCAGCTGTGTTCA | + | + | + | + | + | + | + | + | + | + | + |
45 | miR-79 | ATGCTTTGGTAATCTAGCTTTA | + | + | + | + | + | + | + | + | + | + | + |
46 | miR-34b | CAACCAGCTAACCACACTGCCA | + | + | + | + | + | + | + | + | + | + | + |
Total number of expressed miRNAs | 36 | 35 | 19 | 19 | 22 | 19 | 22 | 19 | 15 | 40 | 36 |
All expressed miRNAs confirmed by microarray and Northern blotting methods are summarized in this table. A normalized signal value ≥1,000 was regarded as the positive expression threshold. Nevertheless, only those having signals higher than 1,000 in at least four specimens are listed here as the confirmed members. The same tissues from females and males are unified here. The alpha-numeric order in the left most column is listed sequentially for easier comparison of the results in this file with the descriptions in the text. Abbreviations: +, expressed; -, not expressed; No. the alpha-numeric number; HD, head; BW, body wall; ASG, anterior silk gland; PSG, posterior silk gland; MG, midgut; FB, fat body; OV, ovary; TE, testis; HC, hemocyte; MT, malpighian tubule; Nor, Northern blotting; NA, not assayed.