Table 1.
Ginger1 DNA transposons.
| Family | Accession no. and coordinates | Approximate copy number | Length (bp) | TIR length (bp) | Intron number | TPase C-terminal domain |
|---|---|---|---|---|---|---|
| Ginger1-1_HM | ABRM01007893.1(3098-6531) | >70 | 3,425 | 270 | 1 | OTU |
| Ginger1-2_HM | ABRM01012112.1(11743-14806) | >100 | 3,064 | 126 | 1 | OTU |
| Ginger1-3_HM | ABRM01024346.1(3521-874) | >74 | 2,649 | 142 | 1 | OTU |
| Ginger1-4_HM | ABRM01000174.1(14295-8442) | >69 | 5,882 | 70 | 0 | Ulp1 |
| Ginger1-5_HM | ABRM01005903.1(8144-1149) | >40 | 7,091 | 45 | 4 | Ulp1 |
| Ginger1-6_HM | ABRM01005903.1(15631-10432) | >18 | 5,214 | 44 | 2 | Ulp1 |
| Ginger1-7_HM | ABRM01000534.1(9961-3846) | >16 | 6,088 | 57 | 2 | Ulp1 |
| Ginger1-8_HM | ABRM01022284.1(8912-3479) | >20 | 5,501 | 58 | 2 | Ulp1 |
| Ginger1-9_HM | ABRM01021331.1(4894-8615) | >22 | 3,758 | 120 | 2 | Ulp1, PHD |
| Ginger1-10_HM | Join ABRM01011282.1(16673-21197), ABRM01021532.1(14237-12463) | ≥5 | 6,495 | 106 | 0 | Ulp1 |
| Ginger1-11_HM | ABRM01013794.1(17006-12397) | >23 | 4,645 | 109 | 1 | OTU |
| Ginger1-12_HM | ABRM01051013.1(2282-4618) | >5 | NA | NA | 1 | Ulp1 |
| Giger1-1_AC | AASC02016817.1(36379-31560) | ≥5 | 4,336 | 140 | 2 | OTU |
| Ginger1-1_BF | ABEP01037661.1(397-5076) | ≥1 | 4,068 | 77 | 0 | NA |
| Ginger1-1-AP | Join ABLF01057402.1(1975-5709), ABLF01044749.1(3692-2680) | ≥1 | NA | NA | 4 | OTU |
| Ginger1-2-AP | ABLF01023350.1(6513-3321) | ≥1 | NA | NA | 1 | OTU |
AC = Aplysia californica; AP = Acyrthosiphon pisum; BF = Branchiostoma floridae; bp, base pairs; Ginger = 'Gypsy INteGrasE Related'; HM = Hydra magnipapillata; OTU = ovarian tumor (OTU) cysteine protease domain (pfam02338); PHD = plant homeodomain finger motif (smart00249); TIR = terminal inverted repeat; TPase = transposase; Ulp1 = C-terminal catalytic domain of Ulp1 protease (pfam02902).