Table 2.
Clones with recurrent copy number changes shared by cell lines and tissue specimens
| A: Clones with recurrent copy number gains shared by cell lines and tissue specimens | ||||
|---|---|---|---|---|
| Chromosomal region | Genes | Frequency | P-value | |
| Cell lines | Tissue | |||
| 1q44 | FLJ10157 | 13/24 | 19/35 | 0.992806112 |
| 8q22.1 | TSPYL5 | 15/24 | 22/35 | 0.977767962 |
| 8q21.3 | NBS1, DECR1 | 14/24 | 20/35 | 0.927569885 |
| 8q23.1 | MGC35555 | 14/24 | 20/35 | 0.927569885 |
| 1q21.1 | - | 12/24 | 18/35 | 0.914136773 |
| 1q21.2-1q21.3 | PIP5K1A, PSMD4, KIAA1441 | 12/24 | 18/35 | 0.914136773 |
| 1q23.1 | SH2D2A, INSRR, NTRK1 | 12/24 | 18/35 | 0.914136773 |
| 1q32.1 | MDM4 | 12/24 | 18/35 | 0.914136773 |
| 1q42.11 | CAPN2, TP53BP2 | 12/24 | 17/35 | 0.914136773 |
| 1q44 | FLJ32001, CGI-49 | 12/24 | 17/35 | 0.914136773 |
| 1q44 | OR1C1, OR9H1P, OR11L1 | 12/24 | 18/35 | 0.914136773 |
| 7p14.1 | TRGJP2, TRGC1, TRGJ1 | 12/24 | 18/35 | 0.914136773 |
| 7p14.1 | TRGJP1, TRGV11, TRGVB | 12/24 | 17/35 | 0.914136773 |
| 8q24.22 | - | 12/24 | 17/35 | 0.914136773 |
| 17q25.3 | TBCD | 12/24 | 17/35 | 0.914136773 |
| 1q25.1 | TNN, KIAA0040 | 14/24 | 21/35 | 0.898133861 |
| 8q21.3 | NBS1 | 14/24 | 18/35 | 0.898133861 |
| 8q22.2 | KCNS2, STK3 | 14/24 | 18/35 | 0.898133861 |
| B; Clones with recurrent copy number losses shared by cell lines and tissue specimens | ||||
| Chromosomal region | Genes | Frequency (%) | P-value | |
| Cell lines | Tissue | |||
| 17p11.2 | DRG2, MYO15A, LLGL1, FLII | 13/24 | 19/35 | 0.992806112 |
| 17p12 | LOC388338, HS3ST3B1 | 15/24 | 22/35 | 0.977767962 |
| 11q23.2 | ZBTB16 | 12/24 | 18/35 | 0.914136773 |
| 11q25 | SPAS1 | '12/24 | 18/35 | 0.914136773 |
| 17p13.3 | NXN | '12/24 | 17/35 | 0.914136773 |
| 17p13.1 | ASGR1, DLG4, ACADVL | 14/24 | 21/35 | 0.898133861 |
| 17p13.1 | MYH3, SCO1, MDS006 | 14/24 | 19/34 | 0.852726956 |