. Author manuscript; available in PMC: 2010 Mar 10.

Published in final edited form as: Acta Crystallogr D Biol Crystallogr. 2006 Mar 18;62(Pt 4):398–409. doi: 10.1107/S0907444906002204

Table 1.

The properties of test proteins: Ribose-binding protein, Lactoferrin, and Calcium ATPase. We also present the RMSD values as results of iterative NMA and the R factor and correlation coefficient after applying MR with the final conformations.

Protein type	Ribose-binding protein	Lactoferrin	Calcium ATPase
Template PDB	1URP	1LFG	1SU4
Target PDB	2DRI	1LFH	1T5S
Space group	P2₁2₁2₁	P2₁2₁2₁	C2
Number of residues	271	691	994
Number of domains	2	4	4
Initial RMSD (Å)	4.1	6.4	14.0
Domain range	N (1~103, 236~264)	N1 (1~91, 251~339)	M (1~124, 240~343, 751~994)
	C (104~235, 265~271)	N2 (92~250)	A (125~239)
		C1 (340~434, 595~691)	P (344~360, 600~750)
		C2 (435~594)	N (361~599)

RMSD of the final candidate (Å)	0.7	1.4	5.0
R factor	47.3	48.7	55.2
Correlation Coefficient	45.5	50.3	47.7