Table 3.
Nested TEs demonstrating inserted orientation bias
| Inserted TE family | Targeted TE family | Insertions in sense | Insertions in antisense | Fold change sense/antisense |
|---|---|---|---|---|
| Preferential insertion in sense | ||||
| Alu | Alu | 3419 | 1296 | 2.63812 |
| MuDR | ERVL | 50 | 20 | 2.5 |
| Alu | L1 | 44 751 | 20 044 | 2.23264 |
| L1 | L1 | 21 559 | 9899 | 2.1779 |
| L1 | Alu | 222 | 103 | 2.15534 |
| ERVL | ERVL | 1080 | 535 | 2.01869 |
| MIR | RTE (L4) | 51 | 30 | 1.7 |
| ERVL | ERV1 | 215 | 138 | 1.55797 |
| Alu | CR1 | 544 | 352 | 1.54545 |
| RTE (L4) | MaLR | 49 | 32 | 1.53125 |
| Preferential insertion in antisense | ||||
| L2 | ERV1 | 20 | 38 | 0.526316 |
| Alu | L2 | 3783 | 6895 | 0.548658 |
| MIR | MER2_type | 29 | 50 | 0.58 |
| Tip100 | ERVL | 36 | 61 | 0.590164 |
| MaLR | Tc2 | 28 | 47 | 0.595745 |
| L2 | RTE (L4) | 23 | 37 | 0.621622 |
| MaLR | RTE (L4) | 51 | 82 | 0.621951 |
| Tip100 | MIR | 37 | 59 | 0.627119 |
| Alu | ERVK | 27 | 43 | 0.627907 |
Intergenic nested TEs of more than 50 genomic occurrences and fold change higher than 1.5 or lower than 0.66 are shown. TE family names are those given by rmsk.