Table 2.
Categories of altered genes in CNE-2 single clone cells by macrophages-like cells during conditioned culture
| Accession No. | Gene description | Alteration |
|---|---|---|
| NM_001012 | Ribosomes This gene encodes a ribosomal protein that is a component of the 40S subunit. | Up |
| NM_002140.2 | heterogeneous nuclear ribonucleoproteins (hnRNPs) | Up |
| NM_005174.2 | Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA | Up |
| NM_015937.3 | Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), mRNA | Up |
| NM_018085.4 | Homo sapiens importin 9 (IPO9) | Up |
| NM_000314.4 | Homo sapiens phosphatase and tensin homolog (PTEN) | Up |
| NM_001033756.1 | Homo sapiens vascular endothelial growth factor A (VEGFA), transcript variant 7, mRNA | Up |
| NM_003064.2 | Homo sapiens secretory leukocyte peptidase inhibitor (SLPI) | Up |
| NM_002394.4 | Homo sapiens solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (SLC3A2), transcript variant 3 | Up |
| NM_005496.3 | Homo sapiens structural maintenance of chromosomes 4 (SMC4), transcript variant 1 | Up |
| NM_006145.1 | Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 1 (DNAJB1) | Up |
| NM_002306.2 | Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 1 | Up |
| NM_020186.1 | Homo sapiens ACN9 homolog (S. cerevisiae) (ACN9) | Up |
| NM_005347.2 | Homo sapiens heat shock 70 kDa protein 5 (glucose-regulated protein,78 kDa) (HSPA5) | Up |
| NM_016639.1 | Homo sapiens tumor necrosis factor receptor superfamily, member 12A (TNFRSF12A) | Up |
| NM_005348.3 | Homo sapiens heat shock protein 90 kDa alpha (cytosolic), class A member 1 (HSP90AA1), transcript variant 2 | Up |
| NM_194247.2 | Homo sapiens heterogeneous nuclear ribonucleoprotein A3 (HNRNPA3) | Up |
| NM_004148.3 | Homo sapiens ninjurin 1 (NINJ1) | Up |
| NM_002337.1 | Homo sapiens low density lipoprotein receptor-related protein associated protein 1 (LRPAP1) | Up |
| NM_001003703.1 | Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 (ATP5J), nuclear gene encoding mitochondrial protein, transcript variant 1 | Up |
| NM_004048.2 | Homo sapiens beta-2-microglobulin (B2M) | Up |
| NM_000146.3 | Homo sapiens ferritin, light polypeptide (FTL) | Up |
| NM_001105079.1 | Homo sapiens fibrosin (FBRS), mRNA | Up |
| NM_001002.3 | Homo sapiens ribosomal protein, large, P0 (RPLP0) transcript variant 1 | Up |
| NM_015134.2 | Homo sapiens myosin phosphatase Rho interacting protein (MPRIP), transcript variant 1 | Up |
| NM_004888.3 | Homo sapiens ATPase, H+ transporting, lysosomal 13 kDa, V1 subunit G1 (ATP6V1G1) | Up |
| NM_015161.1 | Homo sapiens ADP-ribosylation factor-like 6 interacting protein 1 (ARL6IP1) | Up |
| NM_001001973.1 | Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1), nuclear gene encoding mitochondrial protein, transcript variant 1 | Up |
| NM_001997.3 | Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU) | Up |
| NM_006196.2 | Homo sapiens poly(rC) binding protein 1 (PCBP1) | Up |
| NM_000925.2 | Homo sapiens pyruvate dehydrogenase (lipoamide) beta (PDHB) | Up |
| NR_003286.1 | Homo sapiens 18S ribosomal RNA (LOC100008588) | Up |
| BAG64005.1 | unnamed protein product | Up |
| NW_001838014.1 | Homo sapiens chromosome 10 genomic contig, alternate assembly | Up |
| NT_007592.14 | Homo sapiens chromosome 6 genomic contig, reference assembly | Up |
| NW_001839064.2 | Homo sapiens chromosome 7 genomic contig, alternate assembly | Up |