Table 1.

Genes differentially expressed (P < 0.05) in control lines following Cre-mediated excision of the ABF3 transgene

Line	Probe Set ID	AGI	Annotation	M	P
48	267442_at	At2g19080	Metaxin-related	0.68	1.22 × 10-2
57	244939_at	AtCg00065	Ribosomal protein s12 (Transplice part 1 of 2) (rps12.1)*	2.58	9.11 × 10-4
	244992_s_at	AtCg00900/AtCg01240	Ribosomal protein s7 (rps7)*	1.50	2.97 × 10-2
	245608_at	At4g14350	Protein kinase family protein	-0.99	5.86 × 10-3
	247137_at	At5g66210	Calcium-dependent protein kinase family protein (CDPK28)	-1.20	3.35 × 10-2
	247754_at	At5g59080	Expressed protein	1.33	2.20 × 10-2
	248812_at	At5g47330	Palmitoyl protein thioesterase family protein	2.34	7.24 × 10-3
	252053_at	At3g52400	Syntaxin, putative (SYP122)	-1.09	3.60 × 10-2
	255655_at	At4g00980	Zinc knuckle (CCHC-type) family protein	1.39	4.60 × 10-6
	259072_at	At3g11700	Fasciclin-like arabinogalactin protein 18 precursor (FLA18)	-0.73	2.29 × 10-3
	259348_at	At3g03770	Leucine-rich repeat transmembrane protein kinase, putative	0.91	1.82 × 10-2
59	244939_at	AtCg00065	Ribosomal protein s12 (Transplice part 1 of 2) (rps12.1)*	2.50	1.52 × 10-3
	244992_s_at	AtCg00900/AtCg01240	Ribosomal protein s7 (rps7)*	1.51	2.69 × 10-2
	246727_at	At5g28010	Bet v I allergen family protein	2.02	1.10 × 10-5
	262719_at	At1g43590	Transposable element gene	1.29	1.30 × 10-2

M is log2 fold change and P is FDR-adjusted P-value for Student's t-test.

* indicates genes encoded by the chloroplast genome.